ggKbase home page

PLM4_32_coex_redo_sep16_scaffold_389

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_coex_redo_sep16_scaffold_389_1
RBG_13_Chloroflexi_50_21_curated, Chloroflexi, Bacteria

Not on your lists

3..1319
DNA (1317bp) protein (439aa)
Uncharacterized protein Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NLZ5_MARHT
hypothetical protein
Tax=RBG_13_Chloroflexi_50_21_curated
PLM4_32_coex_redo_sep16_scaffold_389_2
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

1320..2915
DNA (1596bp) protein (532aa)
hypothetical protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
Glucose/sorbosone dehydrogenase-like protein
Tax=RBG_16_Zixibacteria_50_21_curated
PLM4_32_coex_redo_sep16_scaffold_389_3
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2934..3431
DNA (498bp) protein (166aa)
Putative uncharacterized protein Tax=Methylococcus capsulatus RepID=Q60CG5_METCA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAU90628.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
PLM4_32_coex_redo_sep16_scaffold_389_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3496..4935
DNA (1440bp) protein (480aa)
Glutamate dehydrogenase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9T0_NIAKG
glutamate dehydrogenase
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM4_32_coex_redo_sep16_scaffold_389_5
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

4937..5758
DNA (822bp) protein (274aa)
Methyltransferase family protein bin=GWA2_Ignavibacteria_55_11 species=Rhizobium leguminosarum genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
type 11 methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM4_32_coex_redo_sep16_scaffold_389_6
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5755..6096)
DNA (342bp) protein (114aa)
TonB-dependent siderophore receptor Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BM70_DELAS
TonB-dependent siderophore receptor
TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KFJ12531.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
PLM4_32_coex_redo_sep16_scaffold_389_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

6220..8961
DNA (2742bp) protein (914aa)
Peptidase M16 domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XB52_9BACT
Peptidase M16 domain protein {ECO:0000313|EMBL:EEF62737.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
peptidase M16 domain-containing protein
PLM4_32_coex_redo_sep16_scaffold_389_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9123..11153
DNA (2031bp) protein (677aa)
Uncharacterized protein Tax=uncultured Latescibacteria bacterium RepID=Q2YZV3_9BACT
S9A family peptidase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_32_coex_redo_sep16_scaffold_389_9
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11159..11572
DNA (414bp) protein (138aa)
UPI0003CE53E6 related cluster Tax=unknown RepID=UPI0003CE53E6
putative dioxygenase of extradiol dioxygenase family
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:AEH89469.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
PLM4_32_coex_redo_sep16_scaffold_389_10
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

11569..12732
DNA (1164bp) protein (388aa)
Glycine/D-amino acid oxidases (deaminating) (EC:1.5.3.1)
Glycine/D-amino acid oxidases (Deaminating) {ECO:0000313|EMBL:CCW34929.1}; EC=1.5.3.1 {ECO:0000313|EMBL:CCW34929.1};; species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
Glycine/D-amino acid oxidases (Deaminating) Tax=Chthonomonas calidirosea T49 RepID=S0EUF7_9BACT
PLM4_32_coex_redo_sep16_scaffold_389_11
unknown

Not on your lists

12797..13258
DNA (462bp) protein (154aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_389_12
RHI_Planctomycetes_52_36, Planctomycetes, Bacteria

Not on your lists

comp(13341..13982)
DNA (642bp) protein (214aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Endonuclease III bin=GWC2_Deltaproteobacteria_56_8 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
Tax=RIFCSPHIGHO2_12_FULL_Planctomycetes_52_36_curated
PLM4_32_coex_redo_sep16_scaffold_389_13
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13979..14800)
DNA (822bp) protein (274aa)
Oxidoreductase Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67RQ0_SYMTH
oxidoreductase
Oxidoreductase {ECO:0000313|EMBL:BAD39643.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
PLM4_32_coex_redo_sep16_scaffold_389_14
Planctopirus limnophila, Planctopirus, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(14797..17154)
DNA (2358bp) protein (786aa)
ATP-binding protein Tax=Schlesneria paludicola RepID=UPI00029A8839
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG69842.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
PLM4_32_coex_redo_sep16_scaffold_389_15
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(17157..18251)
DNA (1095bp) protein (365aa)
AAA ATPase Tax=Desulfovibrio fructosivorans JJ RepID=E1JSC6_DESFR
Uncharacterized protein {ECO:0000313|EMBL:KDA54108.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
putative ATPase
PLM4_32_coex_redo_sep16_scaffold_389_16
unknown

Not on your lists

comp(18272..21385)
DNA (3114bp) protein (1038aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_389_17
unknown

Not on your lists

comp(21403..21705)
DNA (303bp) protein (101aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_389_18
unknown

Not on your lists

comp(21756..22127)
DNA (372bp) protein (124aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_389_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

22308..23669
DNA (1362bp) protein (454aa)
prolyl oligopeptidase family protein (EC:3.4.-.-)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase Tax=Rheinheimera sp. A13L RepID=F7NZ42_9GAMM bin=16ft_combo_ws3_JS1 species=Rheinheimera sp. A13L genus=Rheinheimera taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 19 items

View Taxonomy