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PLM4_5_b1_sep16_scaffold_597

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_597_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1..1029)
DNA (1029bp) protein (343aa)
UDP-3-O-acylglucosamine N-acyltransferase Tax=Chthoniobacter flavus Ellin428 RepID=B4D713_9BACT bin=16ft_combo_ws3_JS1 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1042..1602)
DNA (561bp) protein (187aa)
Outer membrane chaperone Skp (OmpH) Tax=Fibrobacter succinogenes (strain ATCC 19169 / S85) RepID=C9RJJ1_FIBSS bin=16ft_combo_ws3_JS1 species=Fibrobacter succinogenes genus=Fibrobacter taxon_order=Fibrobacterales taxon_class=Fibrobacteria phylum=Fibrobacteres tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
outer membrane chaperone Skp
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1613..4111)
DNA (2499bp) protein (833aa)
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
surface antigen (D15)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4125..6584)
DNA (2460bp) protein (820aa)
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ATPase AAA
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6679..7770)
DNA (1092bp) protein (364aa)
Putative ATP:guanido phosphotransferase DESHY_150004 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8EGH0_9FIRM bin=16ft_combo_ws3_JS1 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ATP:guanido phosphotransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7767..8300)
DNA (534bp) protein (178aa)
ABC transporter; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8308..8982)
DNA (675bp) protein (225aa)
ABC transporter related Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E4H0_GEOLS bin=16ft_combo_ws3_JS1 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter related protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9045..10283)
DNA (1239bp) protein (413aa)
Lipoprotein releasing system, transmembrane protein, LolC/E family Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG33_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
lolC; Lipoprotein releasing system, transmembrane protein, LolC/E family
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10280..11815)
DNA (1536bp) protein (512aa)
Lysine--tRNA ligase Tax=Moorella thermoacetica (strain ATCC 39073) RepID=SYK_MOOTA bin=16ft_combo_ws3_JS1 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
lysyl-tRNA synthetase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11936..13372)
DNA (1437bp) protein (479aa)
Amidophosphoribosyltransferase Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E710_GEOLS bin=16ft_combo_ws3_JS1 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
amidophosphoribosyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13369..13935)
DNA (567bp) protein (189aa)
id=5224144 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13950..14759)
DNA (810bp) protein (270aa)
Phosphoribosylformylglycinamidine synthase 1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BUN0_METCG bin=16ft_combo_ws3_JS1 species=Methanosaeta concilii genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Phosphoribosylformylglycinamidine synthase I
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14756..17113)
DNA (2358bp) protein (786aa)
Phosphoribosylformylglycinamidine synthase 2 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=PURL_METTP bin=16ft_combo_ws3_JS1 species=Methanosaeta thermophila genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
purL; phosphoribosylformylglycinamidine synthase II
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(17110..18405)
DNA (1296bp) protein (432aa)
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase Tax=Thermaerobacter RepID=E6SMP7_THEM7 bin=16ft_combo_ws3_JS1 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(18402..19526)
DNA (1125bp) protein (375aa)
Peptidase S1 and S6 chymotrypsin/Hap Tax=Caldithrix abyssi DSM 13497 RepID=H1XQQ5_9BACT bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Trypsin-like serine protease
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_597_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(19523..20230)
DNA (708bp) protein (236aa)
tRNA pseudouridine synthase A (EC:4.2.1.70)
tRNA pseudouridine synthase A Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CKF3_DESK7 bin=16ft_combo_ws3_JS1 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 16 items

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