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PLM4_5_b1_sep16_scaffold_4238

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_4238_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(1..2358)
DNA (2358bp) protein (786aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ATP-dependent protease La (EC:3.4.21.53)
Lon protease Tax=Pedosphaera parvula Ellin514 RepID=B9XSI5_9BACT
PLM4_5_b1_sep16_scaffold_4238_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(2403..2822)
DNA (420bp) protein (140aa)
Heat shock protein Hsp20 Tax=Pedosphaera parvula Ellin514 RepID=B9XSI4_9BACT
Heat shock protein Hsp20 {ECO:0000313|EMBL:EEF57184.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
small heat shock protein
PLM4_5_b1_sep16_scaffold_4238_3
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

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3165..3593
DNA (429bp) protein (143aa)
Putative uncharacterized protein Tax=Bilophila sp. 4_1_30 RepID=G1V2E7_9DELT
putative thioesterase
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM4_5_b1_sep16_scaffold_4238_4
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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3674..3931
DNA (258bp) protein (86aa)
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM4_5_b1_sep16_scaffold_4238_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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4296..5279
DNA (984bp) protein (328aa)
Thiazole biosynthesis protein ThiH Tax=Pedosphaera parvula Ellin514 RepID=B9XPP2_9BACT
Thiazole biosynthesis protein ThiH {ECO:0000313|EMBL:EEF58165.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
thiH; thiamine biosynthesis enzyme ThiH
PLM4_5_b1_sep16_scaffold_4238_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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5287..5493
DNA (207bp) protein (69aa)
Thiamine biosynthesis protein ThiS Tax=Pedosphaera parvula Ellin514 RepID=B9XPP0_9BACT
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:EEF58163.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
thiamine biosynthesis protein ThiS
PLM4_5_b1_sep16_scaffold_4238_7
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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5541..5816
DNA (276bp) protein (92aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA300-N18 RepID=UPI000382E3DD
peptide methionine sulfoxide reductase
PLM4_5_b1_sep16_scaffold_4238_8
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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5850..6164
DNA (315bp) protein (105aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
Peptide methionine sulfoxide reductase MsrA Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGI7_NIAKG
Peptide methionine sulfoxide reductase msrA
PLM4_5_b1_sep16_scaffold_4238_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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6239..7612
DNA (1374bp) protein (458aa)
Aconitate hydratase domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XBH0_9BACT
Aconitate hydratase domain protein {ECO:0000313|EMBL:EEF62855.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
leuC; 3-isopropylmalate dehydratase large subunit
PLM4_5_b1_sep16_scaffold_4238_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

7639..9534
DNA (1896bp) protein (632aa)
O-antigen polymerase Tax=Pedosphaera parvula Ellin514 RepID=B9XBG9_9BACT
O-antigen polymerase {ECO:0000313|EMBL:EEF62854.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
O-antigen polymerase
PLM4_5_b1_sep16_scaffold_4238_11
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

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comp(9584..10720)
DNA (1137bp) protein (379aa)
methionine synthase (B12-independent) (EC:2.1.1.14)
Methionine synthase (B12-independent) Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024B1_SOLUE
Tax=RBG_16_Planctomycetes_64_12_curated
PLM4_5_b1_sep16_scaffold_4238_12
unknown

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10746..11027
DNA (282bp) protein (94aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_4238_trna_1
unknown

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11076..11157
DNA (82bp)
transferRNA Leu
PLM4_5_b1_sep16_scaffold_4238_13
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

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comp(11287..11853)
DNA (567bp) protein (189aa)
Glr1723 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NJV8_GLOVI
hypothetical protein
Glr1723 protein {ECO:0000313|EMBL:BAC89664.1}; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter violaceus (strain PCC 7421).;"
PLM4_5_b1_sep16_scaffold_4238_14
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(11843..12310)
DNA (468bp) protein (156aa)
Glr1722 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NJV9_GLOVI
hypothetical protein
Glr1722 protein {ECO:0000313|EMBL:BAC89663.1}; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter violaceus (strain PCC 7421).;"
PLM4_5_b1_sep16_scaffold_4238_15
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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comp(12535..13344)
DNA (810bp) protein (270aa)
Mannan endo-1,4-beta-mannosidase Tax=Pedosphaera parvula Ellin514 RepID=B9XJY2_9BACT
mannan endo-1,4-beta-mannosidase A and B
Tax=RBG_13_Planctomycetes_60_9_curated
Displaying 16 items

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