ggKbase home page

PLM4_5_b1_sep16_scaffold_4494

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_4494_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(146..775)
DNA (630bp) protein (210aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Superoxide dismutase Tax=Pedosphaera parvula Ellin514 RepID=B9XMA4_9BACT
sodA; superoxide dismutase
PLM4_5_b1_sep16_scaffold_4494_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(1067..1711)
DNA (645bp) protein (215aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Imidazole glycerol phosphate synthase subunit HisH Tax=Pedosphaera parvula Ellin514 RepID=B9XSY8_9BACT
imidazole glycerol phosphate synthase glutamine amidotransferase subunit
PLM4_5_b1_sep16_scaffold_4494_3
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

1742..4306
DNA (2565bp) protein (855aa)
Putative signal transduction histidine kinase Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SFX5_RHOMR
putative signal transduction histidine kinase
Putative signal transduction histidine kinase {ECO:0000313|EMBL:AEN72584.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
PLM4_5_b1_sep16_scaffold_4494_4
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4377..4853
DNA (477bp) protein (159aa)
hypothetical protein Tax=Gracilimonas tropica RepID=UPI0003808F10
Response regulator receiver domain protein {ECO:0000313|EMBL:EDY83134.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_4494_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

5270..7540
DNA (2271bp) protein (757aa)
Acyl-CoA dehydrogenase domain protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CV6_SOLUE
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABJ81110.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_5_b1_sep16_scaffold_4494_6
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

7551..9428
DNA (1878bp) protein (626aa)
electron-transferring-flavoprotein dehydrogenase (EC:1.5.5.1)
Electron-transferring-flavoprotein dehydrogenase {ECO:0000313|EMBL:ACB77161.1}; EC=1.5.5.1 {ECO:0000313|EMBL:ACB77161.1};; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Electron-transferring-flavoprotein dehydrogenase Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZZ89_OPITP
PLM4_5_b1_sep16_scaffold_4494_7
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

9488..10297
DNA (810bp) protein (270aa)
Electron transfer flavoprotein beta subunit-like protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZZ90_OPITP
electron transfer flavoprotein beta subunit-like protein
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM4_5_b1_sep16_scaffold_4494_8
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

10738..11418
DNA (681bp) protein (227aa)
Electron transfer flavoprotein alpha subunit-like protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZZ91_OPITP
electron transfer flavoprotein alpha subunit-like protein
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM4_5_b1_sep16_scaffold_4494_9
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(11542..13035)
DNA (1494bp) protein (498aa)
RDD domain containing protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUF8_OPITP
RDD domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
PLM4_5_b1_sep16_scaffold_4494_10
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(13453..14010)
DNA (558bp) protein (186aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUG0_OPITP
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACB74003.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM4_5_b1_sep16_scaffold_4494_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(14213..14635)
DNA (423bp) protein (141aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XFW2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61124.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_4494_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(14692..14919)
DNA (228bp) protein (76aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA primase Tax=Pedosphaera parvula Ellin514 RepID=B9XFW4_9BACT
Displaying 12 items

View Taxonomy