ggKbase home page

PLM4_5_b1_sep16_scaffold_1409

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1409_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

604..1236
DNA (633bp) protein (211aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XDE1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62087.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_1409_2
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

1424..2929
DNA (1506bp) protein (502aa)
Mu-like prophage FluMu protein gp28 Tax=Opitutaceae bacterium TAV1 RepID=I6AWS1_9BACT
Mu-like prophage FluMu protein gp28 {ECO:0000313|EMBL:EIP99462.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_1409_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2979..4409
DNA (1431bp) protein (477aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036B16AF
Citrate transporter {ECO:0000313|EMBL:EEF61236.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
sodium:proton antiporter
PLM4_5_b1_sep16_scaffold_1409_4
unknown

Not on your lists

comp(4346..4588)
DNA (243bp) protein (81aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1409_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4590..5591
DNA (1002bp) protein (334aa)
Three-deoxy-D-manno-octulosonic-acid transferase domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XBG0_9BACT
Three-deoxy-D-manno-octulosonic-acid transferase domain protein {ECO:0000313|EMBL:EEF62845.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_1409_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

5650..5913
DNA (264bp) protein (88aa)
Three-deoxy-D-manno-octulosonic-acid transferase domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XBG0_9BACT
Three-deoxy-D-manno-octulosonic-acid transferase domain protein {ECO:0000313|EMBL:EEF62845.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
kdtA; CMP-3-deoxy-D-manno-octulosonate--lipid A tetraacyldisaccharide 3-deoxy-D-manno-octulosonate transferase
PLM4_5_b1_sep16_scaffold_1409_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(5920..7008)
DNA (1089bp) protein (363aa)
Twitching motility protein Tax=Pedosphaera parvula Ellin514 RepID=B9XBG1_9BACT
Twitching motility protein {ECO:0000313|EMBL:EEF62846.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
twitching motility protein
PLM4_5_b1_sep16_scaffold_1409_8
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

7170..8552
DNA (1383bp) protein (461aa)
Serine/threonine protein kinase related protein-like protein Tax=Rhodopirellula maiorica SM1 RepID=M5S4W5_9PLAN
Serine/threonine protein kinase related protein-like protein {ECO:0000313|EMBL:EMI21229.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_1409_trna_1
unknown

Not on your lists

comp(8606..8677)
DNA (72bp)
transferRNA Thr
PLM4_5_b1_sep16_scaffold_1409_9
RLO_WOR_2_51_8, WOR-2, Bacteria

Not on your lists

8835..10337
DNA (1503bp) protein (501aa)
UPI00029ACE5E related cluster Tax=unknown RepID=UPI00029ACE5E bin=16ft_combo_ws3_JS1 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative methyltransferase
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_8_curated
PLM4_5_b1_sep16_scaffold_1409_10
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(10442..13105)
DNA (2664bp) protein (888aa)
Phosphoesterase Tax=Pedosphaera parvula Ellin514 RepID=B9XDS6_9BACT
Phosphoesterase family protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
PLM4_5_b1_sep16_scaffold_1409_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(13148..14290)
DNA (1143bp) protein (381aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase Tax=Pedosphaera parvula Ellin514 RepID=B9XDJ1_9BACT
PLM4_5_b1_sep16_scaffold_1409_12
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(14360..15688)
DNA (1329bp) protein (443aa)
Response regulator receiver protein bin=GWA2_Elusimicrobia_69_24 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
response regulator receiver protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM4_5_b1_sep16_scaffold_1409_13
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

comp(15744..16760)
DNA (1017bp) protein (339aa)
cytochrome d ubiquinol oxidase, subunit II (EC:3.1.3.1)
hypothetical protein Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI000375D81C
Tax=BJP_IG2102_BRC1_58_13
PLM4_5_b1_sep16_scaffold_1409_14
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

comp(16774..18222)
DNA (1449bp) protein (483aa)
cytochrome bd quinol oxidase subunit 1 apoprotein (EC:1.10.3.-)
Cytochrome bd quinol oxidase subunit 1 apoprotein Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SSC3_PLABD
Tax=BJP_IG2102_BRC1_58_13
PLM4_5_b1_sep16_scaffold_1409_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(18469..19248)
DNA (780bp) protein (260aa)
Response regulator receiver protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D3R5_9BACT
Response regulator receiver protein {ECO:0000313|EMBL:EDY18895.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
response regulator receiver protein
PLM4_5_b1_sep16_scaffold_1409_16
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

19841..20374
DNA (534bp) protein (178aa)
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
K(+)-insensitive pyrophosphate-energized proton pump Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZTP5_OPITP
Displaying 17 items

View Taxonomy