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PLM4_5_b1_sep16_scaffold_1622

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1622_1
unknown

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comp(3..647)
DNA (645bp) protein (215aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000368A87F
PLM4_5_b1_sep16_scaffold_1622_2

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comp(822..1199)
DNA (378bp) protein (126aa)
Uncharacterized protein {ECO:0000313|EMBL:AGW45559.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium Lac161.;"
Putative uncharacterized protein bin=GWF2_Lentisphaerae_57_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
PLM4_5_b1_sep16_scaffold_1622_3
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1196..1654)
DNA (459bp) protein (153aa)
LuxR family transcriptional regulator Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5DED3
Uncharacterized protein {ECO:0000313|EMBL:ETW92920.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
LuxR family two component transcriptional regulator
PLM4_5_b1_sep16_scaffold_1622_4
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(1880..2458)
DNA (579bp) protein (193aa)
Response regulator receiver domain protein Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JGA6_9BACT
Response regulator receiver domain protein {ECO:0000313|EMBL:EDY83134.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
two component LuxR family transcriptional regulator
PLM4_5_b1_sep16_scaffold_1622_5
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(2524..3351)
DNA (828bp) protein (276aa)
Putative signal transduction histidine kinase Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SFX5_RHOMR
putative signal transduction histidine kinase
Putative signal transduction histidine kinase {ECO:0000313|EMBL:AEN72584.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
PLM4_5_b1_sep16_scaffold_1622_6
unknown

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3992..4327
DNA (336bp) protein (112aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1622_7
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(4708..5952)
DNA (1245bp) protein (415aa)
hypothetical protein Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI000365F8E2
Transporter, major facilitator family {ECO:0000313|EMBL:EDY81609.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_1622_8
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6007..7809)
DNA (1803bp) protein (601aa)
Erythromycin esterase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U4M5_MYXSD
erythromycin esterase
Erythromycin esterase {ECO:0000313|EMBL:AGC43113.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
PLM4_5_b1_sep16_scaffold_1622_9
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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8076..9140
DNA (1065bp) protein (355aa)
Glycoside hydrolase family 43 Tax=Fibrisoma limi BUZ 3 RepID=I2GKA6_9BACT
Glycoside hydrolase family 43 {ECO:0000313|EMBL:CCH54331.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
glycoside hydrolase family protein
PLM4_5_b1_sep16_scaffold_1622_10
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

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comp(9284..10462)
DNA (1179bp) protein (393aa)
Aminotransferase class I and II bin=GWF2_Lentisphaerae_57_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
class I and II aminotransferase
Tax=GWF2_Lentisphaerae_57_35_curated
PLM4_5_b1_sep16_scaffold_1622_11
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

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comp(10437..10916)
DNA (480bp) protein (160aa)
Transcriptional regulator, AsnC family bin=GWF2_Lentisphaerae_57_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
AsnC family transcriptional regulator
Tax=GWF2_Lentisphaerae_57_35_curated
PLM4_5_b1_sep16_scaffold_1622_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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11033..11368
DNA (336bp) protein (112aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003711183
Regulatory protein, FmdB family {ECO:0000313|EMBL:EDY20359.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
FmdB family regulatory protein
PLM4_5_b1_sep16_scaffold_1622_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11381..12901
DNA (1521bp) protein (507aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XSN5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57154.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_1622_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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13004..13561
DNA (558bp) protein (186aa)
Translation elongation factor P Tax=Pedosphaera parvula Ellin514 RepID=B9XCX2_9BACT
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
elongation factor P
PLM4_5_b1_sep16_scaffold_1622_15
Vibrio sp. S234-5, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13709..14440)
DNA (732bp) protein (244aa)
AraC-type DNA-binding domain-containing protein Tax=Vibrio sinaloensis DSM 21326 RepID=E8M6T3_9VIBR
AraC family transcriptional regulator {ECO:0000313|EMBL:KJR39898.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sp. S234-5.;"
AraC family transcriptional regulator
PLM4_5_b1_sep16_scaffold_1622_16
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14513..14779)
DNA (267bp) protein (89aa)
hypothetical protein, partial Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000378007C
general secretory pathway protein E
General secretory pathway protein E {ECO:0000313|EMBL:ADC63922.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
PLM4_5_b1_sep16_scaffold_1622_17
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14829..15671)
DNA (843bp) protein (281aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI000363ABB5
general secretory pathway protein E
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
PLM4_5_b1_sep16_scaffold_1622_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15824..16429
DNA (606bp) protein (202aa)
FHA domain containing protein Tax=Pedosphaera parvula Ellin514 RepID=B9XC98_9BACT
FHA domain containing protein {ECO:0000313|EMBL:EEF62566.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
FHA domain-containing protein
PLM4_5_b1_sep16_scaffold_1622_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

16460..17245
DNA (786bp) protein (262aa)
Oxidoreductase domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XAE0_9BACT
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:EEF62975.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Displaying 19 items

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