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PLM4_5_b1_sep16_scaffold_1679

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1679_1
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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comp(2..418)
DNA (417bp) protein (139aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU000506}; EC=2.7.7.12 {ECO:0000256|RuleBase:RU000506};; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
Galactose-1-phosphate uridylyltransferase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6Q0_CALAS
galT; galactose-1-phosphate uridylyltransferase
PLM4_5_b1_sep16_scaffold_1679_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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619..1194
DNA (576bp) protein (192aa)
Ribosome-recycling factor Tax=Pedosphaera parvula Ellin514 RepID=B9XIZ1_9BACT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
frr; ribosome recycling factor Frr
PLM4_5_b1_sep16_scaffold_1679_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(1191..1511)
DNA (321bp) protein (107aa)
Septum formation initiator Tax=Pedosphaera parvula Ellin514 RepID=B9XIZ2_9BACT
Septum formation initiator {ECO:0000313|EMBL:EEF60219.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_1679_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(1557..1943)
DNA (387bp) protein (129aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XC88_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62556.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_1679_5
unknown

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2039..2665
DNA (627bp) protein (209aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000367ED94
PLM4_5_b1_sep16_scaffold_1679_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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2826..4049
DNA (1224bp) protein (408aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
glucuronate isomerase (EC:5.3.1.12)
Uronate isomerase Tax=Chthoniobacter flavus Ellin428 RepID=B4CUM8_9BACT
PLM4_5_b1_sep16_scaffold_1679_7
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3992..4168
DNA (177bp) protein (59aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-M04 RepID=UPI0003616A24
glucuronate isomerase
PLM4_5_b1_sep16_scaffold_1679_8
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

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comp(4180..5907)
DNA (1728bp) protein (576aa)
Gamma-glutamyltransferase Tax=Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) RepID=C7RCK2_KANKD
gamma-glutamyltransferase
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
PLM4_5_b1_sep16_scaffold_1679_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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6084..7976
DNA (1893bp) protein (631aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XKE0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59610.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_1679_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(8179..8466)
DNA (288bp) protein (96aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C Tax=Pedosphaera parvula Ellin514 RepID=B9XMN9_9BACT
glutamyl-tRNA amidotransferase
PLM4_5_b1_sep16_scaffold_1679_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(8475..8774)
DNA (300bp) protein (100aa)
Phosphotransferase system, phosphocarrier protein HPr Tax=Pedosphaera parvula Ellin514 RepID=B9XMN8_9BACT
Phosphotransferase system, phosphocarrier protein HPr {ECO:0000313|EMBL:EEF58937.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phosphotransferase system, phosphocarrier protein HPr
PLM4_5_b1_sep16_scaffold_1679_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(8825..9772)
DNA (948bp) protein (316aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
HPr kinase/phosphorylase Tax=Pedosphaera parvula Ellin514 RepID=B9XMN7_9BACT
hprK; Serine kinase of the HPr protein, regulates carbohydrate metabolism
PLM4_5_b1_sep16_scaffold_1679_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(9783..10550)
DNA (768bp) protein (256aa)
ABC transporter related-protein Tax=Pedosphaera parvula Ellin514 RepID=B9XMN6_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF58935.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily
PLM4_5_b1_sep16_scaffold_1679_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(10650..12512)
DNA (1863bp) protein (621aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XMN5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58934.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_1679_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(12527..13099)
DNA (573bp) protein (191aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family (EC:3.1.3.45)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family Tax=Pedosphaera parvula Ellin514 RepID=B9XMN4_9BACT
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family {ECO:0000313|EMBL:EEF58933.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_1679_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(13096..13914)
DNA (819bp) protein (273aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase Tax=Pedosphaera parvula Ellin514 RepID=B9XMN3_9BACT
PLM4_5_b1_sep16_scaffold_1679_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(13955..14182)
DNA (228bp) protein (76aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|RuleBase:RU003565, ECO:0000256|SAAS:SAAS00083544}; EC=2.7.7.27 {ECO:0000256|RuleBase:RU003565, ECO:0000256|SAAS:SAAS00083544};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Glucose-1-phosphate adenylyltransferase Tax=Pedosphaera parvula Ellin514 RepID=B9XMJ3_9BACT
glgC; ADP-glucose pyrophosphorylase
PLM4_5_b1_sep16_scaffold_1679_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(14221..15165)
DNA (945bp) protein (315aa)
nucleotidyl transferase; K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] bin=CNBR_ACIDO species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Glucose-1-phosphate adenylyltransferase {ECO:0000256|RuleBase:RU003565, ECO:0000256|SAAS:SAAS00083544}; EC=2.7.7.27 {ECO:0000256|RuleBase:RU003565, ECO:0000256|SAAS:SAAS00083544};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
PLM4_5_b1_sep16_scaffold_1679_19
unknown

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comp(16703..17143)
DNA (441bp) protein (147aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1679_20
unknown

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comp(17140..17448)
DNA (309bp) protein (103aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1679_21
unknown

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comp(17738..18532)
DNA (795bp) protein (265aa)

This feature has no annotations

Displaying 21 items

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