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PLM4_5_b1_sep16_scaffold_3019

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_3019_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(1..336)
DNA (336bp) protein (112aa)
GTP cyclohydrolase FolE2 {ECO:0000256|HAMAP-Rule:MF_01527}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_01527};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
GTP cyclohydrolase FolE2 Tax=Pedosphaera parvula Ellin514 RepID=B9XR80_9BACT
GTP cyclohydrolase I
PLM4_5_b1_sep16_scaffold_3019_2
unknown

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comp(383..826)
DNA (444bp) protein (148aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_3019_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(823..1473)
DNA (651bp) protein (217aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Pedosphaera parvula Ellin514 RepID=B9XNH1_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF58630.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ECF subfamily RNA polymerase sigma-24 subunit
PLM4_5_b1_sep16_scaffold_3019_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(1565..2476)
DNA (912bp) protein (304aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XNH2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58631.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_3019_5
unknown

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comp(2543..2731)
DNA (189bp) protein (63aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_3019_6
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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2810..3739
DNA (930bp) protein (310aa)
Uncharacterized protein bin=GWA2_Bacteroidetes_A19_40_15 species=Parabacteroides merdae genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_A19_40_15 organism_group=Bacteroidetes
hypothetical protein
Tax=GWA2_Bacteroidetes_40_15_curated
PLM4_5_b1_sep16_scaffold_3019_7
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

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3712..4482
DNA (771bp) protein (257aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Pedosphaera parvula Ellin514 RepID=B9XQ22_9BACT
hypothetical protein
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM4_5_b1_sep16_scaffold_3019_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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4712..5947
DNA (1236bp) protein (412aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D211_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY19773.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_3019_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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6414..7109
DNA (696bp) protein (232aa)
Radical SAM domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XAQ0_9BACT
Radical SAM domain protein {ECO:0000313|EMBL:EEF63085.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
radical SAM domain-containing protein
PLM4_5_b1_sep16_scaffold_3019_10
Agarivorans albus, Agarivorans, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7444..8070)
DNA (627bp) protein (209aa)
Uncharacterized protein Tax=Agarivorans albus MKT 106 RepID=R9PTC9_AGAAL
Uncharacterized protein {ECO:0000313|EMBL:GAD02201.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Agarivorans.;" source="Agarivorans albus MKT 106.;"
putative periplasmic or secreted lipoprotein
PLM4_5_b1_sep16_scaffold_3019_11
unknown

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comp(8341..8505)
DNA (165bp) protein (55aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_3019_12
CG_Arma_01, Armatimonadetes, Bacteria

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8749..11103
DNA (2355bp) protein (785aa)
hypothetical protein Tax=Spirosoma panaciterrae RepID=UPI00035D23A7
hypothetical protein
Tax=CG_Arma_01
PLM4_5_b1_sep16_scaffold_3019_13
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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11159..13711
DNA (2553bp) protein (851aa)
hypothetical protein Tax=Flexithrix dorotheae RepID=UPI00035E628D
Endoglucanase D Short=EGD {ECO:0000313|EMBL:CCH52773.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
Cellulase
PLM4_5_b1_sep16_scaffold_3019_14
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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14040..14615
DNA (576bp) protein (192aa)
Uncharacterized protein Tax=Cystobacter fuscus DSM 2262 RepID=S9P8H2_9DELT
Endonuclease {ECO:0000313|EMBL:KFA91624.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
endonuclease/exonuclease/phosphatase
Displaying 14 items

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