ggKbase home page

PLM4_5_b1_sep16_scaffold_3341

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_3341_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(2..1252)
DNA (1251bp) protein (417aa)
serine/threonine kinase Pkn10 Tax=Verrucomicrobium spinosum RepID=UPI0001744BF6
Serine/threonine protein kinase {ECO:0000313|EMBL:EEF58114.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
serine/threonine protein kinase
PLM4_5_b1_sep16_scaffold_3341_2
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(1246..1956)
DNA (711bp) protein (237aa)
Serine/threonine protein kinase Tax=Opitutaceae bacterium TAV1 RepID=I6AN24_9BACT
serine/threonine protein kinase
Tax=RBG_16_Planctomycetes_64_12_curated
PLM4_5_b1_sep16_scaffold_3341_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2099..3715
DNA (1617bp) protein (539aa)
L-lactate transport Tax=Pedosphaera parvula Ellin514 RepID=B9XFH6_9BACT
L-lactate transport {ECO:0000313|EMBL:EEF61340.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
L-lactate transport protein
PLM4_5_b1_sep16_scaffold_3341_4
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3791..5032
DNA (1242bp) protein (414aa)
NAD-dependent epimerase/dehydratase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UC43_MYXSD
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:AGC44034.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
NAD-dependent epimerase/dehydratase
PLM4_5_b1_sep16_scaffold_3341_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

5038..5811
DNA (774bp) protein (258aa)
Excinuclease ABC C subunit domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XN43_9BACT
Excinuclease ABC C subunit domain protein {ECO:0000313|EMBL:EEF58705.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
uvrC; excinuclease ABC subunit C
PLM4_5_b1_sep16_scaffold_3341_6
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(5902..6822)
DNA (921bp) protein (307aa)
Transcriptional regulator, NifA subfamily, Fis Family Tax=Pedosphaera parvula Ellin514 RepID=B9XF66_9BACT
sigma-54 factor interaction domain-containing protein
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
PLM4_5_b1_sep16_scaffold_3341_7
unknown

Not on your lists

6830..7588
DNA (759bp) protein (253aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_3341_8
Candidatus Cloacimonas acidaminovorans, Candidatus Cloacimonas, Cloacimonetes, Bacteria

Not on your lists

7665..8057
DNA (393bp) protein (131aa)
LPBCA THIOREDOXIN Tax=synthetic construct RepID=UPI0002638C92
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077, ECO:0000313|EMBL:CAO80698.1}; species="Bacteria; Cloacimonetes; Candidatus Cloacimonas.;" source="Cloacamonas acidaminovorans (strain Evry).;"
thioredoxin
PLM4_5_b1_sep16_scaffold_3341_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8060..8374
DNA (315bp) protein (105aa)
Glycoside hydrolase family 13 domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XPM1_9BACT
Glycoside hydrolase family 13 domain protein {ECO:0000313|EMBL:EEF58249.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycoside hydrolase family 13 domain protein
PLM4_5_b1_sep16_scaffold_3341_10
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8383..9645
DNA (1263bp) protein (421aa)
Secretion protein HlyD family protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LPJ8_SYNFM
secretion protein HlyD family protein
Tax=CG_Delta_01
PLM4_5_b1_sep16_scaffold_3341_11
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

9658..12822
DNA (3165bp) protein (1055aa)
Acriflavin resistance plasma membrane protein bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
acriflavin resistance plasma membrane protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
PLM4_5_b1_sep16_scaffold_3341_12
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

12791..14008
DNA (1218bp) protein (406aa)
Outer membrane efflux protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LPJ6_SYNFM
outer membrane efflux protein
Tax=RBG_13_Planctomycetes_60_9_curated
Displaying 12 items

View Taxonomy