ggKbase home page

PLM4_5_b1_sep16_scaffold_3837

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_3837_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(3..797)
DNA (795bp) protein (265aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XRQ0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57465.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_3837_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

924..1835
DNA (912bp) protein (304aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Malonyl CoA-acyl carrier protein transacylase Tax=Pedosphaera parvula Ellin514 RepID=B9XSP9_9BACT
malonyl CoA-acyl carrier protein transacylase
PLM4_5_b1_sep16_scaffold_3837_3

Not on your lists

1957..2700
DNA (744bp) protein (248aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI00037A589A
3 oxoacyl acyl carrier protein synthase {ECO:0000313|EMBL:ADD93465.1}; species="Bacteria; environmental samples.;" source="uncultured marine bacterium MedDCM-OCT-S04-C123.;"
3-oxoacyl-(acyl-carrier-protein) reductase
PLM4_5_b1_sep16_scaffold_3837_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2817..3062
DNA (246bp) protein (82aa)
Acyl carrier protein Tax=Pedosphaera parvula Ellin514 RepID=B9XSV5_9BACT
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
acpP; acyl carrier protein
PLM4_5_b1_sep16_scaffold_3837_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3399..4487
DNA (1089bp) protein (363aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 Tax=Pedosphaera parvula Ellin514 RepID=B9XSV4_9BACT
3-oxoacyl-(acyl-carrier-protein) synthase 2
PLM4_5_b1_sep16_scaffold_3837_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4537..5847
DNA (1311bp) protein (437aa)
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:EEF57089.1}; EC=2.4.2.4 {ECO:0000313|EMBL:EEF57089.1};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Pyrimidine-nucleoside phosphorylase Tax=Pedosphaera parvula Ellin514 RepID=B9XSV2_9BACT
pyrimidine-nucleoside phosphorylase
PLM4_5_b1_sep16_scaffold_3837_7
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(5786..6544)
DNA (759bp) protein (253aa)
Putative uncharacterized protein Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EN63_CORAD
hypothetical protein
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_5_b1_sep16_scaffold_3837_8
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6611..7141)
DNA (531bp) protein (177aa)
Metal dependent phosphohydrolase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ARW7_RUBXD
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ABG05861.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM4_5_b1_sep16_scaffold_3837_9
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7180..7878
DNA (699bp) protein (233aa)
Methyltransferase 11-domain-containing protein bin=CD_OP8_4m species=Desulfotignum phosphitoxidans genus=Desulfotignum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
PLM4_5_b1_sep16_scaffold_3837_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8018..9241
DNA (1224bp) protein (408aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Argininosuccinate synthase Tax=Pedosphaera parvula Ellin514 RepID=B9XCH2_9BACT
argininosuccinate synthase
PLM4_5_b1_sep16_scaffold_3837_11
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

9578..10846
DNA (1269bp) protein (423aa)
oxidoreductase domain-containing protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
oxidoreductase domain-containing protein
Tax=RBG_16_Planctomycetes_64_12_curated
PLM4_5_b1_sep16_scaffold_3837_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(10875..12272)
DNA (1398bp) protein (466aa)
Tetratricopeptide domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XLQ8_9BACT
Tetratricopeptide domain protein {ECO:0000313|EMBL:EEF59165.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_3837_13
RBG_16_Desulfobacca_60_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13494..14075
DNA (582bp) protein (194aa)
Uncharacterized protein Tax=Rhizobium freirei PRF 81 RepID=N6U9Z2_9RHIZ
Tax=RBG_16_Desulfobacca_60_12_curated
PLM4_5_b1_sep16_scaffold_3837_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


14229..14456
DNA (228bp) protein (76aa)
50S ribosomal protein L28 Tax=Pedosphaera parvula Ellin514 RepID=B9XT04_9BACT
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
50S ribosomal protein L28
PLM4_5_b1_sep16_scaffold_3837_15
RLO_PLX_64_10, Bacteria

Not on your lists

comp(14520..15488)
DNA (969bp) protein (323aa)
Cation diffusion facilitator family transporter bin=GWA2_Ignavibacteria_55_11 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
cation diffusion facilitator family transporter
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_5_b1_sep16_scaffold_3837_16
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15623..17434
DNA (1812bp) protein (604aa)
Dolichyl-phosphate-mannose-protein mannosyltransferase Tax=Methylophaga lonarensis MPL RepID=M7P400_9GAMM
4-amino-4-deoxy-L-arabinose transferase
Tax=CG_Rhodocyc_01
PLM4_5_b1_sep16_scaffold_3837_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(17478..19007)
DNA (1530bp) protein (510aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000380E448
Outer membrane efflux protein {ECO:0000313|EMBL:EEF59896.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative outer membrane efflux protein
PLM4_5_b1_sep16_scaffold_3837_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(19108..19638)
DNA (531bp) protein (177aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Sua5/YciO/YrdC/YwlC family protein Tax=Pedosphaera parvula Ellin514 RepID=B9XJL9_9BACT
Sua5/YciO/YrdC/YwlC family protein
Displaying 18 items

View Taxonomy