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PLM4_5_b1_sep16_scaffold_2328

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_2328_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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1..480
DNA (480bp) protein (160aa)
hypothetical protein Tax=Gemmata obscuriglobus RepID=UPI00016C4F06
spore coat protein CotH
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_5_b1_sep16_scaffold_2328_2
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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1567..1914
DNA (348bp) protein (116aa)
Putative uncharacterized protein bin=GWC2_Bacteroidetes_40_22 species=Runella slithyformis genus=Runella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
hypothetical protein
Tax=GWA2_Bacteroidetes_40_15_curated
PLM4_5_b1_sep16_scaffold_2328_3
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

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1979..3298
DNA (1320bp) protein (440aa)
hypothetical protein Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI0003696F02
hypothetical protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
PLM4_5_b1_sep16_scaffold_2328_4

Not on your lists

3336..4310
DNA (975bp) protein (325aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000379A5CB
Marine sediment metagenome DNA, contig: S01H1_S14131 {ECO:0000313|EMBL:GAF99842.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
xylose isomerase domain-containing protein
PLM4_5_b1_sep16_scaffold_2328_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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4545..4760
DNA (216bp) protein (72aa)
Translation initiation factor IF-1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL49_9BACT
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
translation initiation factor IF-1
PLM4_5_b1_sep16_scaffold_2328_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4793..6091
DNA (1299bp) protein (433aa)
rhlE; ATP-dependent RNA helicase RhlE (EC:3.6.1.-)
DEAD/DEAH box helicase domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XIC3_9BACT
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:EEF60384.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_2328_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(6152..7402)
DNA (1251bp) protein (417aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Signal transduction histidine kinase, nitrogen specific, NtrB Tax=Pedosphaera parvula Ellin514 RepID=B9XR32_9BACT
ntrB; Signal transduction histidine kinase with PAS domain
PLM4_5_b1_sep16_scaffold_2328_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7420..8361)
DNA (942bp) protein (314aa)
Magnesium and cobalt transport protein CorA Tax=Pedosphaera parvula Ellin514 RepID=B9XR33_9BACT
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
magnesium transporter
PLM4_5_b1_sep16_scaffold_2328_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8623..9321
DNA (699bp) protein (233aa)
ureF; urease accessory protein F UreF (EC:3.5.1.5)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XI02_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60495.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_2328_10
unknown

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comp(9335..10987)
DNA (1653bp) protein (551aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_2328_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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11126..11926
DNA (801bp) protein (267aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI00037D3B13
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_5_b1_sep16_scaffold_2328_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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12090..12812
DNA (723bp) protein (241aa)
MotA/TolQ/ExbB proton channel Tax=Pedosphaera parvula Ellin514 RepID=B9XKH6_9BACT
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:EEF59646.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
MotA/TolQ/ExbB proton channel
PLM4_5_b1_sep16_scaffold_2328_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12957..13385
DNA (429bp) protein (143aa)
Biopolymer transport protein ExbD/TolR Tax=Pedosphaera parvula Ellin514 RepID=B9XKH5_9BACT
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:EEF59645.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
exbD1; biopolymer transport ExbD protein
PLM4_5_b1_sep16_scaffold_2328_14
Arthrobotrys oligospora, Orbilia, Orbiliales, Orbiliomycetes, Ascomycota, Fungi

Not on your lists

13385..14266
DNA (882bp) protein (294aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000368B220
Uncharacterized protein {ECO:0000313|EMBL:EGX47933.1}; species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Orbiliomycetes; Orbiliales; Orbiliaceae; Orbilia.;" source="Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491); (Nematode-trapping fungus) (Didymozoophaga oligospora).;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_2328_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14263..15438
DNA (1176bp) protein (392aa)
WD40 domain protein beta Propeller Tax=Pedosphaera parvula Ellin514 RepID=B9XKH3_9BACT
WD40 domain protein beta Propeller {ECO:0000313|EMBL:EEF59643.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Tol-Pal system beta propeller repeat-containing protein TolB
PLM4_5_b1_sep16_scaffold_2328_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15469..16080
DNA (612bp) protein (204aa)
Peptidoglycan-associated lipoprotein Tax=Pedosphaera parvula Ellin514 RepID=B9XKH2_9BACT
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:EEF59642.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ompA; Outer membrane protein or related peptidoglycan-associated (lipo)protein
PLM4_5_b1_sep16_scaffold_2328_17
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(16333..16671)
DNA (339bp) protein (113aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI000380FDB3
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
PLM4_5_b1_sep16_scaffold_2328_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(16844..18022)
DNA (1179bp) protein (393aa)
aspartate transaminase (EC:2.6.1.1)
Aminotransferase class I and II Tax=Pedosphaera parvula Ellin514 RepID=B9XP88_9BACT
Aminotransferase class I and II {ECO:0000313|EMBL:EEF58339.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_2328_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

18274..19521
DNA (1248bp) protein (416aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A Tax=Pedosphaera parvula Ellin514 RepID=B9XMP1_9BACT
PLM4_5_b1_sep16_scaffold_2328_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(19691..21562)
DNA (1872bp) protein (624aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Acetyl-coenzyme A synthetase Tax=Pedosphaera parvula Ellin514 RepID=B9XLV4_9BACT
acetate--CoA ligase
PLM4_5_b1_sep16_scaffold_2328_21
uncultured Acetothermia bacterium, Acetothermia, Bacteria

Not on your lists

21688..22236
DNA (549bp) protein (183aa)
Cell surface protein Tax=uncultured candidate division OP1 bacterium RepID=H5S8X1_9BACT
Cell surface protein {ECO:0000313|EMBL:BAL52607.1}; species="Bacteria; Acetothermia; environmental samples.;" source="uncultured Acetothermia bacterium.;"
WD40-like repeat protein
Displaying 21 items

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