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PLM4_5_b1_sep16_scaffold_2571

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_2571_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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1..621
DNA (621bp) protein (207aa)
Aldose 1-epimerase Tax=Pedosphaera parvula Ellin514 RepID=B9XG88_9BACT
Aldose 1-epimerase {ECO:0000313|EMBL:EEF61250.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
aldose epimerase
PLM4_5_b1_sep16_scaffold_2571_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(618..1121)
DNA (504bp) protein (168aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phosphoribosylaminoimidazole carboxylase PurE (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase Tax=Pedosphaera parvula Ellin514 RepID=B9XJ15_9BACT
PLM4_5_b1_sep16_scaffold_2571_3
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

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1233..1625
DNA (393bp) protein (131aa)
pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
Putative pterin-4-alpha-carbinolamine dehydratase bin=GWC2_Geobacteraceae_55_20 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_2571_4
R_WOR_2_52_10, WOR-2, Bacteria

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1913..2317
DNA (405bp) protein (135aa)
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_52_10_curated
PLM4_5_b1_sep16_scaffold_2571_5
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

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2623..3771
DNA (1149bp) protein (383aa)
Shikimate/quinate 5-dehydrogenase bin=GWF2_Lentisphaerae_57_35 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
glutamyl-tRNA reductase
Tax=GWF2_Lentisphaerae_57_35_curated
PLM4_5_b1_sep16_scaffold_2571_6
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

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3966..4697
DNA (732bp) protein (244aa)
Tax=CG_Delta_07
PLM4_5_b1_sep16_scaffold_2571_7
Caldithrix abyssi, Caldithrix, Bacteria

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4937..6028
DNA (1092bp) protein (364aa)
NHL repeat containing protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XY19_9BACT
NHL repeat containing protein {ECO:0000313|EMBL:EHO40894.1}; Flags: Precursor;; species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
NHL repeat-containing protein
PLM4_5_b1_sep16_scaffold_2571_8
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

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6126..7316
DNA (1191bp) protein (397aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI0003668EFE
cytochrome C family protein
Tax=GWC2_Nitrospirae_57_9_curated
PLM4_5_b1_sep16_scaffold_2571_9
unknown

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7464..9524
DNA (2061bp) protein (687aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_2571_10
GWA2_Deltaproteobacteria_54_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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9526..10572
DNA (1047bp) protein (349aa)
NHL repeat containing protein bin=GWB2_Proteobacteria_55_19 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
NHL repeat containing protein
Tax=GWA2_Deltaproteobacteria_54_12_curated
PLM4_5_b1_sep16_scaffold_2571_11
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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10569..12332
DNA (1764bp) protein (588aa)
Cytochrome C family protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XY14_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAO29274.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
PLM4_5_b1_sep16_scaffold_2571_12
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(12415..13896)
DNA (1482bp) protein (494aa)
glutamate synthase, NADH/NADPH, small subunit (EC:1.4.1.14)
Glutamate synthase, NADH/NADPH, small subunit {ECO:0000313|EMBL:AFZ08954.1}; EC=1.4.1.14 {ECO:0000313|EMBL:AFZ08954.1};; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria nigro-viridis PCC 7112.;"
Glutamate synthase, NADH/NADPH, small subunit Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VN23_9CYAN
PLM4_5_b1_sep16_scaffold_2571_13
CG_Omnitr_06, Omnitrophica, Bacteria

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comp(13954..15441)
DNA (1488bp) protein (496aa)
glutamate synthase (NADH) large subunit (EC:1.4.1.14)
glutamate synthase Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034916CB
Tax=CG_Omnitr_06
Displaying 13 items

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