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PLM4_5_b1_sep16_scaffold_2611

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_2611_1
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(50..691)
DNA (642bp) protein (214aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00035F423E
lipopolysaccharide biosynthesis protein
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:ACV64003.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM; B-1644).;"
PLM4_5_b1_sep16_scaffold_2611_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

802..1686
DNA (885bp) protein (295aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XLX6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59104.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_2611_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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1683..2738
DNA (1056bp) protein (352aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tRNA-dihydrouridine synthase Tax=Pedosphaera parvula Ellin514 RepID=B9XLX7_9BACT
tRNA-dihydrouridine synthase
PLM4_5_b1_sep16_scaffold_2611_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(2751..3179)
DNA (429bp) protein (143aa)
UPF0102 protein Cflav_PD1599 Tax=Pedosphaera parvula Ellin514 RepID=B9XLX9_9BACT
UPF0102 protein Cflav_PD1599 {ECO:0000256|HAMAP-Rule:MF_00048}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_2611_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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3277..4194
DNA (918bp) protein (306aa)
Methyltransferase type 11 Tax=Pedosphaera parvula Ellin514 RepID=B9XKK2_9BACT
Methyltransferase type 11 {ECO:0000313|EMBL:EEF59672.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
SAM-dependent methyltransferase family protein
PLM4_5_b1_sep16_scaffold_2611_6
unknown

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4627..4734
DNA (108bp) protein (36aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_2611_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(4800..5468)
DNA (669bp) protein (223aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII Tax=Pedosphaera parvula Ellin514 RepID=B9XLY3_9BACT
PLM4_5_b1_sep16_scaffold_2611_8
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(5509..7476)
DNA (1968bp) protein (656aa)
Major facilitator superfamily MFS_1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029C3_SOLUE
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABJ82368.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_5_b1_sep16_scaffold_2611_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

7693..8355
DNA (663bp) protein (221aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XIX5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60202.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Conserved hypothetical protein CHP00730
PLM4_5_b1_sep16_scaffold_2611_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8359..9633
DNA (1275bp) protein (425aa)
Peptidase M16 domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XIX4_9BACT
Peptidase M16 domain protein {ECO:0000313|EMBL:EEF60201.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
peptidase M16 domain-containing protein
PLM4_5_b1_sep16_scaffold_2611_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

10078..11115
DNA (1038bp) protein (346aa)
Para-aminobenzoate synthase, subunit I {ECO:0000313|EMBL:EEF60200.1}; EC=4.1.3.27 {ECO:0000313|EMBL:EEF60200.1};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
para-aminobenzoate synthase, subunit I (EC:4.1.3.27)
Para-aminobenzoate synthase, subunit I Tax=Pedosphaera parvula Ellin514 RepID=B9XIX3_9BACT
PLM4_5_b1_sep16_scaffold_2611_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11112..11969
DNA (858bp) protein (286aa)
IlvE; branched-chain amino acid aminotransferase (EC:2.6.1.42)
Aminodeoxychorismate lyase Tax=Pedosphaera parvula Ellin514 RepID=B9XIW9_9BACT
Aminodeoxychorismate lyase {ECO:0000313|EMBL:EEF60196.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_2611_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12242..12472
DNA (231bp) protein (77aa)
nagD; N-acetylglucosamine-6-phoshatase or p-nitrophenyl phosphatase (EC:3.1.3.41)
HAD-superfamily hydrolase, subfamily IIA Tax=Pedosphaera parvula Ellin514 RepID=B9X9N7_9BACT
HAD-superfamily hydrolase, subfamily IIA {ECO:0000313|EMBL:EEF63281.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_2611_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12466..13101
DNA (636bp) protein (212aa)
HAD-superfamily hydrolase, subfamily IIA Tax=Pedosphaera parvula Ellin514 RepID=B9X9N7_9BACT
HAD-superfamily hydrolase, subfamily IIA {ECO:0000313|EMBL:EEF63281.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
HAD superfamily sugar phosphatase
PLM4_5_b1_sep16_scaffold_2611_15
unknown

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13129..13260
DNA (132bp) protein (44aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_2611_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(13316..14008)
DNA (693bp) protein (231aa)
Two component transcriptional regulator, LuxR family Tax=Pedosphaera parvula Ellin514 RepID=B9XR12_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF57708.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Transcriptional regulatory protein liaR
PLM4_5_b1_sep16_scaffold_2611_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(14087..14692)
DNA (606bp) protein (202aa)
Histidine kinase Tax=Pedosphaera parvula Ellin514 RepID=B9XB01_9BACT
Histidine kinase {ECO:0000313|EMBL:EEF63186.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
Displaying 17 items

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