ggKbase home page

PLM4_5_b1_sep16_scaffold_32050_1

Organism: PLM4_5_b1_sep16_Verrucomicrobia_Verrucomicrobiales_60_7

near complete RP 41 / 55 MC: 1 BSCG 42 / 51 ASCG 9 / 38 MC: 1
Location: comp(1..357)

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.9
  • Coverage: 115.0
  • Bit_score: 178
  • Evalue 3.30e-42
tRNA pseudouridine synthase A Tax=Pedosphaera parvula Ellin514 RepID=B9XDA1_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 73.9
  • Coverage: 115.0
  • Bit_score: 178
  • Evalue 2.40e-42
truA; tRNA pseudouridine synthase A similarity KEGG
DB: KEGG
  • Identity: 52.2
  • Coverage: 115.0
  • Bit_score: 110
  • Evalue 2.20e-22

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 357
GTGGCCTTGGGTGATACCGCAAAATTCCGGCTGACGATTGCCTACGACGGCACTGGCTACGAGGGGTGGCAGGTGCAAAAGATCGGCCTGGGCGTGCAGCAGAAGGTGGAGGAGGCCCTCGCGAAGCTCTTTCCGTCGCAGCCCCGGGTCCATAGCTCCAGCCGCACCGATACCGGCGTGCACGCCCTCGGGATGGTGGCGCACTTCGAAGTGCCGCGCGCCGAATGCACGATGACCGGCCGCAAGCTGGCCCTGGCAGTGAACGCCTGGCTGCCGGAGGATGTGAGGGTTCTTTCCGCAGCCAAGGTGCGCGCGGAATTTCACGCGCGGTTCGACGCCACGGGCAAGCAGTACCGC
PROTEIN sequence
Length: 119
VALGDTAKFRLTIAYDGTGYEGWQVQKIGLGVQQKVEEALAKLFPSQPRVHSSSRTDTGVHALGMVAHFEVPRAECTMTGRKLALAVNAWLPEDVRVLSAAKVRAEFHARFDATGKQYR