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PLM4_65_coex_sep16_scaffold_23

Search features with annotation key words

Displaying items 1-30 of 269 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_23_1
unknown

Not on your lists

comp(3..674)
DNA (672bp) protein (224aa)
hypothetical protein
PLM4_65_coex_sep16_scaffold_23_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(720..1100)
DNA (381bp) protein (127aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PCL8_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM4_65_coex_sep16_scaffold_23_3
unknown

Not on your lists

1185..1358
DNA (174bp) protein (58aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_23_4
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

1375..2475
DNA (1101bp) protein (367aa)
Uncharacterized protein Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4BAM0_TURPD
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_23_5
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

2563..2991
DNA (429bp) protein (143aa)
cytochrome c family protein Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2ABC4
cytochrome c family protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_23_6
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

3007..3390
DNA (384bp) protein (128aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN24_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_23_7
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

3467..4432
DNA (966bp) protein (322aa)
Conserved exported protein Tax=Candidatus Nitrospira defluvii RepID=B3U4N0_9BACT
putative oxidoreductase
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_23_8
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

4440..6770
DNA (2331bp) protein (777aa)
putative 6-phosphofructokinase (EC:2.7.1.11)
Putative 6-phosphofructokinase (Modular protein) Tax=Candidatus Nitrospira defluvii RepID=D8P8W7_9BACT
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_23_9
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

6935..7135
DNA (201bp) protein (67aa)
Putative uncharacterized protein bin=GWD2_Nitrospirae-related_57_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_23_10
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

7151..8218
DNA (1068bp) protein (356aa)
Type IV pilus biogenesis protein PilM Tax=Candidatus Nitrospira defluvii RepID=D8PCY9_9BACT
pilM; type IV pilus biogenesis protein PilM
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_23_11
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

8215..8763
DNA (549bp) protein (183aa)
Fimbrial assembly family protein bin=GWC2_Nitrospirae_57_13 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
putative type IV pilus biogenesis protein PilN
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_23_12
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

8768..9424
DNA (657bp) protein (219aa)
Putative Type IV pilus biogenesis protein PilO Tax=Candidatus Nitrospira defluvii RepID=D8PCZ1_9BACT
putative type IV pilus biogenesis protein PilO
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_23_13
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

9595..12351
DNA (2757bp) protein (919aa)
Type IV pilus secretin PilQ bin=GWC2_Nitrospirae_57_13 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
putative type IV pili biogenesis protein PilQ
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_23_14
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

12363..14030
DNA (1668bp) protein (556aa)
hypothetical protein Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI000380D689
shikimate kinase
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_23_15
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

14073..14540
DNA (468bp) protein (156aa)
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_23_16
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

14691..15173
DNA (483bp) protein (161aa)
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_23_trna_1
unknown

Not on your lists

15266..15349
DNA (84bp)
transferRNA Leu
PLM4_65_coex_sep16_scaffold_23_17
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

15483..16505
DNA (1023bp) protein (341aa)
LysM domain protein Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2TT48_9DELT
LysM domain-containing protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_23_trna_2
unknown

Not on your lists

16589..16668
DNA (80bp)
transferRNA Ala
PLM4_65_coex_sep16_scaffold_23_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

16740..17516
DNA (777bp) protein (259aa)
ycfH; deoxyribonuclease, TatD-related (EC:3.1.21.-)
Uncharacterized deoxyribonuclease, TatD-related Tax=Candidatus Nitrospira defluvii RepID=D8PHC9_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM4_65_coex_sep16_scaffold_23_19
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17585..18163
DNA (579bp) protein (193aa)
Serine/threonine protein kinase Pkn6 Tax=Cystobacter fuscus DSM 2262 RepID=S9PCV8_9DELT
serine/threonine protein kinase
Tax=CG_Delta_07
PLM4_65_coex_sep16_scaffold_23_20
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

18176..18760
DNA (585bp) protein (195aa)
Uncharacterized protein Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RJD4_BLASD
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
PLM4_65_coex_sep16_scaffold_23_21
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

18919..20541
DNA (1623bp) protein (541aa)
GTPase HflX bin=GWC2_Deltaproteobacteria_55_46 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
GTP-binding protein HflX
Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
PLM4_65_coex_sep16_scaffold_23_22
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

20635..21345
DNA (711bp) protein (237aa)
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Endonuclease III Tax=Candidatus Nitrospira defluvii RepID=D8PFY3_9BACT
PLM4_65_coex_sep16_scaffold_23_23
Monoraphidium neglectum, Monoraphidium, Sphaeropleales, Chlorophyceae, Chlorophyta, Viridiplantae

Not on your lists

21342..21995
DNA (654bp) protein (218aa)
ARD/ARD' family protein Tax=Tetrahymena thermophila (strain SB210) RepID=I7MAL0_TETTS
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 {ECO:0000256|HAMAP-Rule:MF_03118}; species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium.;" source="Monoraphidium neglectum.;"
class II aldolase/adducin family protein
PLM4_65_coex_sep16_scaffold_23_24
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

22046..22921
DNA (876bp) protein (292aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PFY4_9BACT
yicC; hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
PLM4_65_coex_sep16_scaffold_23_25
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

23012..23662
DNA (651bp) protein (217aa)
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Guanylate kinase Tax=Candidatus Nitrospira defluvii RepID=D8PFY5_9BACT
PLM4_65_coex_sep16_scaffold_23_26
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

23663..24025
DNA (363bp) protein (121aa)
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega Tax=Candidatus Nitrospira defluvii RepID=D8PFY6_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM4_65_coex_sep16_scaffold_23_27
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

24044..25261
DNA (1218bp) protein (406aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase (EC:6.3.2.5)
Coenzyme A biosynthesis bifunctional protein CoaBC bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
PLM4_65_coex_sep16_scaffold_23_28
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

25556..26683
DNA (1128bp) protein (376aa)
Uncharacterized protein bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein
Tax=GWC2_Nitrospirae_57_13_curated
Displaying items 1-30 of 269 in total

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