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PLM4_65_coex_sep16_scaffold_3317

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_3317_1
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(62..1780)
DNA (1719bp) protein (573aa)
glyS; glycyl-tRNA synthetase subunit beta (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit {ECO:0000255|HAMAP-Rule:MF_00255}; EC=6.1.1.14 {ECO:0000255|HAMAP-Rule:MF_00255};; Glycyl-tRNA synthetase beta subunit {ECO:0000255|HAMAP-Rule:MF_00255}; Short=GlyRS {ECO:0000255|HAMAP-Rule:MF_00255};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Glycine--tRNA ligase beta subunit Tax=Geobacter uraniireducens (strain Rf4) RepID=SYGB_GEOUR
PLM4_65_coex_sep16_scaffold_3317_2
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1813..2121)
DNA (309bp) protein (103aa)
glyS; glycyl-tRNA synthetase subunit beta (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
Glycine--tRNA ligase beta subunit Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=SYGB_GEODF
PLM4_65_coex_sep16_scaffold_3317_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2121..2996)
DNA (876bp) protein (292aa)
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14)
Glycine--tRNA ligase alpha subunit {ECO:0000255|HAMAP-Rule:MF_00254}; EC=6.1.1.14 {ECO:0000255|HAMAP-Rule:MF_00254};; Glycyl-tRNA synthetase alpha subunit {ECO:0000255|HAMAP-Rule:MF_00254}; Short=GlyRS {ECO:0000255|HAMAP-Rule:MF_00254};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Glycine--tRNA ligase alpha subunit Tax=Geobacter uraniireducens (strain Rf4) RepID=SYGA_GEOUR
PLM4_65_coex_sep16_scaffold_3317_4
unknown

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3202..3408
DNA (207bp) protein (69aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_3317_5
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3319..3765)
DNA (447bp) protein (149aa)
50S ribosomal protein L9 Tax=Geobacter uraniireducens (strain Rf4) RepID=RL9_GEOUR
rplI; 50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000255|HAMAP-Rule:MF_00503}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3317_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3786..4730)
DNA (945bp) protein (315aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7R1_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ27829.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3317_7
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4746..5021)
DNA (276bp) protein (92aa)
30S ribosomal protein S18 Tax=Geobacter uraniireducens (strain Rf4) RepID=RS18_GEOUR
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000255|HAMAP-Rule:MF_00270}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3317_8
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5041..5415)
DNA (375bp) protein (125aa)
30S ribosomal protein S6 Tax=Geobacter uraniireducens (strain Rf4) RepID=RS6_GEOUR
rpsF; 30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000255|HAMAP-Rule:MF_00360}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3317_9
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5569..6150)
DNA (582bp) protein (194aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000255|HAMAP-Rule:MF_00083}; Short=PTH {ECO:0000255|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000255|HAMAP-Rule:MF_00083};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Peptidyl-tRNA hydrolase Tax=Geobacter uraniireducens (strain Rf4) RepID=PTH_GEOUR
PLM4_65_coex_sep16_scaffold_3317_10
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6182..6769)
DNA (588bp) protein (196aa)
50S ribosomal protein L25 Tax=Geobacter uraniireducens (strain Rf4) RepID=RL25_GEOUR
50S ribosomal protein L25/general stress protein Ctc
50S ribosomal protein L25 {ECO:0000255|HAMAP-Rule:MF_01334}; General stress protein CTC {ECO:0000255|HAMAP-Rule:MF_01334}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3317_11
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6890..7816)
DNA (927bp) protein (309aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583, ECO:0000313|EMBL:GAM10107.1}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Ribose-phosphate pyrophosphokinase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7R7_GEOUR
phosphoribosylpyrophosphate synthetase
PLM4_65_coex_sep16_scaffold_3317_trna_1
unknown

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comp(7874..7945)
DNA (72bp)
transferRNA Gln
PLM4_65_coex_sep16_scaffold_3317_12
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7980..8822)
DNA (843bp) protein (281aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; Short=CMK {ECO:0000255|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000255|HAMAP-Rule:MF_00061};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=ISPE_GEODF
PLM4_65_coex_sep16_scaffold_3317_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9011..9505)
DNA (495bp) protein (165aa)
Transcriptional regulator, XRE family Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GA62_GEOUR
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABQ25529.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3317_14
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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9707..10009
DNA (303bp) protein (101aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GA61_GEOUR
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_58_17_curated
PLM4_65_coex_sep16_scaffold_3317_15
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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10191..10565
DNA (375bp) protein (125aa)
Response regulator receiver protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GA60_GEOUR
response regulator receiver protein
Tax=RBG_16_Deltaproteobacteria_58_17_curated
PLM4_65_coex_sep16_scaffold_3317_16
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10552..11280)
DNA (729bp) protein (243aa)
ATP-dependent chaperone ClpB Tax=Geobacter metallireducens RepID=Q39RQ5_GEOMG
protein disaggregation chaperone
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034, ECO:0000313|EMBL:GAM10102.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
PLM4_65_coex_sep16_scaffold_3317_17
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11300..13252)
DNA (1953bp) protein (651aa)
ATP-dependent chaperone ClpB Tax=Geobacter metallireducens RepID=Q39RQ5_GEOMG
protein disaggregation chaperone
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_coex_sep16_scaffold_3317_18
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13496..13675)
DNA (180bp) protein (60aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8I0_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ28098.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3317_19
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13698..14180)
DNA (483bp) protein (161aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Branched-chain amino acid aminotransferase Tax=Bacteria RepID=D7AFY1_GEOSK
branched-chain amino acid aminotransferase
Displaying 20 items

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