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QH_1_Halosimplex_carlsbadense_67_29

In projects: QH_1  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halosimplex carlsbadense  →  Halosimplex  →  Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Displaying items 51-100 of 192 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_375
Species: Halosimplex carlsbadense (85.71%)
7 12430 bp 63.46 31.87 86.72
qh_1_scaffold_1928
Species: Halosimplex carlsbadense (80%)
5 5001 bp 68.17 33.85 86.68
qh_1_scaffold_588
Species: Halosimplex carlsbadense (69.23%)
13 13466 bp 68.28 32.92 86.64
qh_1_scaffold_1304
Species: Halosimplex carlsbadense (75%)
8 9488 bp 67.54 28.49 86.64
qh_1_scaffold_1784
Species: Halosimplex carlsbadense (80%)
10 11224 bp 68.88 29.37 86.63
qh_1_scaffold_79
Species: Halosimplex carlsbadense (86.84%)
38 41365 bp 66.37 27.56 86.62
qh_1_scaffold_205
Species: Halosimplex carlsbadense (73.33%)
15 16963 bp 68.77 28.76 86.62
qh_1_scaffold_866
Species: Halosimplex carlsbadense (55.56%)
18 17063 bp 67.07 28.95 86.57
qh_1_scaffold_802
Species: Halosimplex carlsbadense (55.56%)
9 8660 bp 64.41 28.70 86.57
qh_1_scaffold_686
Species: Halosimplex carlsbadense (91.67%)
12 9344 bp 68.10 28.92 86.49
qh_1_scaffold_1501
Species: Halosimplex carlsbadense (90.91%)
11 10172 bp 69.17 32.59 86.47
qh_1_scaffold_80
Species: Halosimplex carlsbadense (57.14%)
28 24738 bp 67.43 27.34 86.43
qh_1_scaffold_1879
Species: Halosimplex carlsbadense (100%)
5 5087 bp 70.55 29.80 86.40
qh_1_scaffold_203
Order: Halobacteriales (50%)
28 26423 bp 64.14 25.10 86.38
qh_1_scaffold_213
Species: Halosimplex carlsbadense (91.67%)
24 24984 bp 65.17 28.27 86.34
qh_1_scaffold_1008
Species: Halosimplex carlsbadense (76.47%)
17 13788 bp 66.80 26.77 86.25
qh_1_scaffold_1373
Species: Halosimplex carlsbadense (84.62%)
13 13233 bp 67.35 28.14 86.24
qh_1_scaffold_38
Species: Halosimplex carlsbadense (78.16%)
87 79203 bp 65.31 27.73 86.13
qh_1_scaffold_34
Species: Halosimplex carlsbadense (83.33%)
36 33202 bp 67.38 27.90 86.03
qh_1_scaffold_93
Species: Halosimplex carlsbadense (76%)
25 24286 bp 67.84 29.54 85.99
qh_1_scaffold_271
Species: Halosimplex carlsbadense (53.33%)
15 14895 bp 68.12 30.29 85.98
qh_1_scaffold_391
Class: Halobacteria (76.47%)
17 15532 bp 61.80 23.17 85.95
qh_1_scaffold_370
Species: Halosimplex carlsbadense (86.67%)
15 12468 bp 67.67 29.77 85.92
qh_1_scaffold_1230
Species: Halosimplex carlsbadense (77.27%)
22 17355 bp 68.60 33.30 85.81
qh_1_scaffold_669
Species: Halosimplex carlsbadense (58.33%)
12 13777 bp 66.23 27.81 85.71
qh_1_scaffold_152
Order: Halobacteriales (68.24%)
85 71591 bp 66.21 28.13 85.70
qh_1_scaffold_1059
Species: Halosimplex carlsbadense (73.33%)
15 14090 bp 67.42 28.72 85.66
qh_1_scaffold_1295
Species: Halosimplex carlsbadense (69.23%)
13 12705 bp 68.38 31.48 85.45
qh_1_scaffold_2125
Species: Halosimplex carlsbadense (66.67%)
6 4711 bp 66.25 26.92 85.40
qh_1_scaffold_1077
Species: Halosimplex carlsbadense (71.43%)
7 7203 bp 68.36 30.25 85.38
qh_1_scaffold_360
Species: Halosimplex carlsbadense (88.24%)
17 14506 bp 67.06 30.10 85.35
qh_1_scaffold_816
Species: Halosimplex carlsbadense (53.33%)
15 9916 bp 67.35 31.26 85.32
qh_1_scaffold_549
Species: Halosimplex carlsbadense (80%)
10 10472 bp 68.62 31.47 85.31
qh_1_scaffold_4803
Species: Halosimplex carlsbadense (71.43%)
7 6817 bp 67.42 25.63 85.24
qh_1_scaffold_2698
Species: Halosimplex carlsbadense (87.5%)
8 7947 bp 67.35 28.00 85.09
qh_1_scaffold_1093
Order: Halobacteriales (50%)
10 10436 bp 65.66 29.73 85.06
qh_1_scaffold_923
Species: Halosimplex carlsbadense (69.23%)
13 11815 bp 67.16 31.31 85.04
qh_1_scaffold_4808
Species: Halosimplex carlsbadense (75%)
8 7828 bp 68.63 28.70 84.93
qh_1_scaffold_1905
Species: Halosimplex carlsbadense (84.21%)
19 17424 bp 68.04 28.51 84.92
qh_1_scaffold_458
Order: Halobacteriales (65.52%)
29 32376 bp 66.85 27.28 84.85
qh_1_scaffold_730
Species: Halosimplex carlsbadense (70.59%)
34 28008 bp 65.89 31.66 84.72
qh_1_scaffold_809
Species: Halosimplex carlsbadense (77.78%)
9 8637 bp 67.23 27.17 84.65
qh_1_scaffold_402
Species: Halosimplex carlsbadense (52.38%)
21 18296 bp 65.63 28.54 84.56
qh_1_scaffold_465
Order: Halobacteriales (55.56%)
18 17553 bp 67.26 30.21 84.41
qh_1_scaffold_1846
Class: Halobacteria (71.43%)
7 6377 bp 65.97 25.34 84.40
qh_1_scaffold_411
Species: Halosimplex carlsbadense (63.16%)
19 13614 bp 66.84 31.53 84.27
qh_1_scaffold_1616
Species: Halosimplex carlsbadense (90%)
20 18958 bp 68.03 30.18 84.27
qh_1_scaffold_14
Species: Halosimplex carlsbadense (65.22%)
46 39179 bp 67.07 28.97 84.22
qh_1_scaffold_1118
Species: Halosimplex carlsbadense (87.5%)
16 14701 bp 65.59 28.94 84.20
qh_1_scaffold_788
Species: Halosimplex carlsbadense (76.47%)
34 35656 bp 65.67 26.68 84.18
Displaying items 51-100 of 192 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.