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QH_1_Halosimplex_carlsbadense_67_29

In projects: QH_1  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halosimplex carlsbadense  →  Halosimplex  →  Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Displaying items 101-150 of 192 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_728
Species: Halosimplex carlsbadense (66.67%)
15 11502 bp 67.07 29.16 84.09
qh_1_scaffold_1649
Species: Halosimplex carlsbadense (100%)
8 5531 bp 66.15 33.07 84.07
qh_1_scaffold_1149
Species: Halosimplex carlsbadense (80%)
15 13751 bp 66.23 27.56 84.02
qh_1_scaffold_1214
Order: Halobacteriales (53.33%)
15 15973 bp 67.06 42.15 83.97
qh_1_scaffold_6137
Species: Halosimplex carlsbadense (75%)
4 3437 bp 63.25 25.08 83.97
qh_1_scaffold_1591
Order: Halobacteriales (76.92%)
13 12687 bp 68.90 32.21 83.92
qh_1_scaffold_412
Species: Halosimplex carlsbadense (62.5%)
32 27739 bp 68.06 30.68 83.91
qh_1_scaffold_476
Species: Halosimplex carlsbadense (70%)
30 31297 bp 65.48 36.74 83.77
qh_1_scaffold_82
Genus: Haloarcula (50%)
28 29189 bp 66.43 32.47 83.75
qh_1_scaffold_281
Species: Halosimplex carlsbadense (70.59%)
51 49775 bp 66.92 28.33 83.62
qh_1_scaffold_551
Species: Halosimplex carlsbadense (100%)
10 10446 bp 67.97 29.14 83.57
qh_1_scaffold_475
Species: Halosimplex carlsbadense (81.58%)
38 33244 bp 67.29 30.77 83.56
qh_1_scaffold_1212
Order: Halobacteriales (60%)
10 9389 bp 64.07 29.79 83.56
qh_1_scaffold_1038
Species: Halosimplex carlsbadense (81.82%)
11 9648 bp 67.00 29.56 83.52
qh_1_scaffold_280
Species: Halosimplex carlsbadense (70.97%)
31 29983 bp 66.99 29.02 83.50
qh_1_scaffold_73
Class: Halobacteria (60.42%)
48 43018 bp 62.67 27.34 83.29
qh_1_scaffold_3612
Species: Halosimplex carlsbadense (100%)
4 3422 bp 68.79 27.15 83.11
qh_1_scaffold_5259
Species: Halosimplex carlsbadense (100%)
8 5252 bp 68.98 31.30 83.05
qh_1_scaffold_1777
Species: Halosimplex carlsbadense (71.43%)
7 10282 bp 66.28 27.30 83.01
qh_1_scaffold_3156
Species: Halosimplex carlsbadense (50%)
4 3720 bp 66.77 28.58 82.98
qh_1_scaffold_776
Species: Halosimplex carlsbadense (78.95%)
19 18660 bp 65.83 34.56 82.97
qh_1_scaffold_148
Class: Halobacteria (87.76%)
49 49042 bp 61.22 27.25 82.97
qh_1_scaffold_1428
Species: Halosimplex carlsbadense (69.57%)
23 19222 bp 66.05 30.48 82.91
qh_1_scaffold_497
Species: Halosimplex carlsbadense (60%)
20 17333 bp 66.91 24.03 82.80
qh_1_scaffold_262
Species: Halosimplex carlsbadense (68.75%)
48 36945 bp 66.80 28.78 82.74
qh_1_scaffold_40
Species: Halosimplex carlsbadense (54.17%)
48 47329 bp 66.54 28.40 82.64
qh_1_scaffold_343
Species: Halosimplex carlsbadense (80%)
25 22803 bp 67.91 30.45 82.46
qh_1_scaffold_1218
Species: Halosimplex carlsbadense (75%)
16 10866 bp 68.61 27.42 82.41
qh_1_scaffold_74
Class: Halobacteria (78.18%)
55 46847 bp 63.14 23.86 82.21
qh_1_scaffold_3326
Species: Halosimplex carlsbadense (100%)
4 3588 bp 66.61 31.24 82.11
qh_1_scaffold_733
Species: Halosimplex carlsbadense (60%)
15 17106 bp 66.75 29.08 82.04
qh_1_scaffold_4594
Species: Halosimplex carlsbadense (100%)
7 5058 bp 69.67 28.94 81.97
qh_1_scaffold_253
Species: Halosimplex carlsbadense (88.24%)
34 32884 bp 66.78 28.71 81.95
qh_1_scaffold_706
Species: Halosimplex carlsbadense (76.09%)
46 39546 bp 66.56 27.83 81.81
qh_1_scaffold_773
Species: Halosimplex carlsbadense (84.62%)
13 13255 bp 68.24 28.68 81.75
qh_1_scaffold_236
Species: Halosimplex carlsbadense (77.78%)
18 18515 bp 65.69 32.34 81.73
qh_1_scaffold_61
Species: Halosimplex carlsbadense (83.33%)
30 29054 bp 66.90 25.77 81.65
qh_1_scaffold_217
Species: Halosimplex carlsbadense (88.89%)
18 16521 bp 68.16 28.62 81.50
qh_1_scaffold_4227
Order: Natrialbales (50%)
4 5911 bp 68.69 33.84 81.36
qh_1_scaffold_202
Species: Halosimplex carlsbadense (64.91%)
57 47376 bp 67.56 29.58 81.28
qh_1_scaffold_644
Species: Halosimplex carlsbadense (78.95%)
19 13483 bp 67.58 29.90 80.88
qh_1_scaffold_442
Species: Halosimplex carlsbadense (50%)
26 19391 bp 68.62 28.98 80.71
qh_1_scaffold_419
Species: Halosimplex carlsbadense (79.73%)
74 68842 bp 67.12 27.49 80.43
qh_1_scaffold_3803
Species: Halosimplex carlsbadense (75%)
4 3323 bp 68.04 29.16 80.35
qh_1_scaffold_6641
Species: Halosimplex carlsbadense (71.43%)
7 5599 bp 66.40 34.81 80.32
qh_1_scaffold_572
Order: Halobacteriales (53.33%)
15 11688 bp 62.94 27.66 80.18
qh_1_scaffold_915
Species: Halosimplex carlsbadense (75%)
24 21859 bp 68.50 29.17 80.15
qh_1_scaffold_1153
Species: Halosimplex carlsbadense (87.5%)
8 7356 bp 65.33 27.24 79.98
qh_1_scaffold_2203
Order: Halobacteriales (80%)
5 4608 bp 66.47 35.31 79.95
qh_1_scaffold_784
Species: Halosimplex carlsbadense (84.62%)
13 11613 bp 67.02 28.29 79.82
Displaying items 101-150 of 192 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.