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QH_1_Halobacteriales_64_38

In projects: QH_1  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 38.38 Longest contig: 87.55 Kbp Bin length: 3.78 Mbp GC content: 64.37 %
Contigs count: 202 Features count: 3903 rRNAs count: 1 tRNAs count: 0

Genome completeness

near complete RP 33 / 55 MC: 4 BSCG 28 / 51 MC: 1 ASCG 37 / 38 MC: 1
Displaying items 101-150 of 202 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_709
Class: Halobacteria (84.62%)
13 15312 bp 63.81 39.31 83.11
qh_1_scaffold_2352
Order: Haloferacales (50%)
6 5188 bp 59.77 27.24 82.92
qh_1_scaffold_879
Genus: Halococcus (50%)
10 9831 bp 66.62 39.42 82.91
qh_1_scaffold_64
Order: Halobacteriales (67.31%)
52 49868 bp 64.68 39.60 82.82
qh_1_scaffold_295
Genus: Halococcus (61.54%)
13 14201 bp 65.06 40.46 82.75
qh_1_scaffold_85
Order: Halobacteriales (73.68%)
38 40086 bp 64.93 39.28 82.70
qh_1_scaffold_54
Class: Halobacteria (86.21%)
87 86299 bp 64.54 40.27 82.63
qh_1_scaffold_780
Order: Halobacteriales (60%)
10 9453 bp 65.21 38.19 82.61
qh_1_scaffold_573
Class: Halobacteria (100%)
11 10253 bp 63.97 37.61 82.57
qh_1_scaffold_444
Order: Halobacteriales (56.25%)
16 11656 bp 63.77 34.93 82.57
qh_1_scaffold_436
Class: Halobacteria (78.57%)
14 11715 bp 62.51 40.10 82.51
qh_1_scaffold_87
Order: Halobacteriales (56.25%)
48 46886 bp 64.89 39.91 82.43
qh_1_scaffold_522
Order: Halobacteriales (54.55%)
22 20319 bp 64.69 38.55 82.39
qh_1_scaffold_31
Order: Halobacteriales (63.53%)
85 79525 bp 65.10 39.79 82.36
qh_1_scaffold_466
Class: Halobacteria (86.67%)
15 12467 bp 63.79 36.87 82.30
qh_1_scaffold_70
Order: Halobacteriales (60%)
40 40633 bp 64.74 40.28 82.26
qh_1_scaffold_940
Order: Halobacteriales (66.67%)
18 14212 bp 65.34 39.98 82.24
qh_1_scaffold_134
Order: Halobacteriales (53.57%)
84 87548 bp 64.15 38.55 82.19
qh_1_scaffold_35
Class: Halobacteria (84.27%)
89 85179 bp 64.72 35.43 82.15
qh_1_scaffold_361
Order: Halobacteriales (52%)
50 46008 bp 65.60 39.77 82.06
qh_1_scaffold_255
Order: Halobacteriales (60%)
45 47204 bp 65.16 38.61 82.01
qh_1_scaffold_747
Class: Halobacteria (81.82%)
11 8937 bp 64.08 38.51 81.74
qh_1_scaffold_357
Genus: Halococcus (52.78%)
36 30425 bp 64.19 39.27 81.72
qh_1_scaffold_23
Class: Halobacteria (74.19%)
31 34885 bp 63.87 37.28 81.64
qh_1_scaffold_645
Class: Halobacteria (78.95%)
19 21620 bp 65.05 39.98 81.47
qh_1_scaffold_2231
Class: Halobacteria (75%)
8 6533 bp 64.87 38.96 81.46
qh_1_scaffold_568
Order: Halobacteriales (54.55%)
11 10301 bp 64.73 46.78 81.46
qh_1_scaffold_3412
Species: Halococcus thailandensis (55.56%)
9 6447 bp 59.39 23.13 81.39
qh_1_scaffold_766
Class: Halobacteria (66.67%)
9 10834 bp 64.17 38.07 81.38
qh_1_scaffold_4488
Class: Halobacteria (55.56%)
9 3598 bp 64.76 18.79 81.30
qh_1_scaffold_1836
Order: Haloferacales (50%)
12 8617 bp 58.55 37.68 81.29
qh_1_scaffold_369
Order: Halobacteriales (50%)
18 19434 bp 65.67 40.15 81.26
qh_1_scaffold_3680
Class: Halobacteria (50%)
6 3386 bp 61.16 26.58 81.25
qh_1_scaffold_5690
Order: Haloferacales (50%)
6 5037 bp 62.26 36.57 81.18
qh_1_scaffold_813
Order: Halobacteriales (58.33%)
12 12676 bp 64.55 45.24 81.15
qh_1_scaffold_548
Order: Halobacteriales (53.85%)
13 13749 bp 64.67 37.91 81.13
qh_1_scaffold_2522
Order: Halobacteriales (50%)
4 4268 bp 64.60 39.71 81.12
qh_1_scaffold_216
Order: Halobacteriales (50%)
36 38364 bp 63.66 36.41 81.10
qh_1_scaffold_150
Order: Halobacteriales (55.56%)
45 41452 bp 65.55 40.09 81.05
qh_1_scaffold_631
Class: Halobacteria (57.89%)
19 11231 bp 55.98 33.65 80.88
qh_1_scaffold_1025
Class: Halobacteria (83.33%)
6 7434 bp 64.82 40.99 80.87
qh_1_scaffold_3549
Order: Halobacteriales (71.43%)
7 5100 bp 61.69 27.10 80.76
qh_1_scaffold_49
Order: Halobacteriales (62.5%)
32 29248 bp 64.68 40.09 80.69
qh_1_scaffold_50
Order: Halobacteriales (60%)
65 48820 bp 63.30 38.73 80.67
qh_1_scaffold_518
Order: Halobacteriales (50%)
18 16400 bp 65.84 39.85 80.67
qh_1_scaffold_159
Order: Halobacteriales (50%)
26 22102 bp 62.25 39.28 80.63
qh_1_scaffold_3605
Order: Haloferacales (50%)
4 3425 bp 63.91 40.47 80.58
qh_1_scaffold_1122
Order: Halobacteriales (71.43%)
14 15865 bp 64.47 38.74 80.35
qh_1_scaffold_232
Order: Halobacteriales (60.87%)
23 19235 bp 65.51 40.07 80.20
qh_1_scaffold_269
Order: Halobacteriales (52.63%)
19 21577 bp 64.85 40.54 80.10
Displaying items 101-150 of 202 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.