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QH_1_Halobacteriales_69_12

In projects: QH_1  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 11.74 Longest contig: 15.48 Kbp Bin length: 1.30 Mbp GC content: 68.50 %
Contigs count: 249 Features count: 1594 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 MC: 1 BSCG 15 / 51 MC: 1 ASCG 22 / 38
Displaying items 1-50 of 249 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
qh_1_scaffold_1447
Order: Halobacteriales (90.91%)
22 15455 bp 67.69 10.75 83.97
qh_1_scaffold_5017
Order: Halobacteriales (73.68%)
19 10744 bp 69.71 12.01 83.57
qh_1_scaffold_3484
Class: Halobacteria (64.71%)
17 12259 bp 72.06 12.95 88.10
qh_1_scaffold_3297
Order: Halobacteriales (73.33%)
15 12320 bp 68.43 14.60 96.23
qh_1_scaffold_5444
Order: Halobacteriales (73.33%)
15 12314 bp 69.08 11.18 73.36
qh_1_scaffold_569
Class: Halobacteria (93.33%)
15 15484 bp 71.06 11.73 82.13
qh_1_scaffold_4798
Order: Halobacteriales (64.29%)
14 9315 bp 69.23 14.89 77.04
qh_1_scaffold_2488
Order: Halobacteriales (100%)
14 8478 bp 68.38 12.77 86.41
qh_1_scaffold_2059
Genus: Haloarcula (53.85%)
13 9948 bp 71.71 10.74 94.57
qh_1_scaffold_3356
Order: Halobacteriales (75%)
12 8847 bp 72.07 13.19 83.76
qh_1_scaffold_1309
Order: Halobacteriales (83.33%)
12 7110 bp 71.05 11.97 93.59
qh_1_scaffold_3263
Order: Halobacteriales (66.67%)
12 8154 bp 69.76 11.76 85.17
qh_1_scaffold_2898
Order: Halobacteriales (91.67%)
12 9212 bp 69.80 11.58 80.96
qh_1_scaffold_1852
Order: Halobacteriales (50%)
12 11351 bp 64.37 10.63 76.25
qh_1_scaffold_1923
Order: Halobacteriales (50%)
12 9023 bp 65.47 11.94 70.05
qh_1_scaffold_3778
Order: Halobacteriales (75%)
12 8685 bp 67.44 12.14 81.11
qh_1_scaffold_3472
Order: Halobacteriales (66.67%)
12 9915 bp 68.37 12.83 74.40
qh_1_scaffold_3210
Order: Halobacteriales (50%)
12 10776 bp 70.69 12.56 86.47
qh_1_scaffold_2511
Order: Natrialbales (63.64%)
11 9706 bp 64.29 9.54 93.38
qh_1_scaffold_1451
Domain: Archaea (54.55%)
11 9498 bp 62.48 8.90 85.38
qh_1_scaffold_829
Order: Halobacteriales (90.91%)
11 10892 bp 68.88 11.51 90.70
qh_1_scaffold_4844
Order: Halobacteriales (81.82%)
11 9288 bp 68.30 12.58 82.43
qh_1_scaffold_2766
Order: Natrialbales (63.64%)
11 9300 bp 66.87 10.25 75.84
qh_1_scaffold_1161
Order: Halobacteriales (63.64%)
11 8936 bp 63.94 10.68 86.11
qh_1_scaffold_9192
Order: Halobacteriales (90%)
10 5275 bp 71.01 13.42 83.32
qh_1_scaffold_1291
Order: Halobacteriales (70%)
10 7749 bp 70.91 14.05 88.31
qh_1_scaffold_3116
Species: Halorubrum kocurii (60%)
10 8642 bp 64.48 8.82 90.74
qh_1_scaffold_2992
Order: Halobacteriales (60%)
10 7729 bp 69.58 12.11 91.60
qh_1_scaffold_9000
Order: Halobacteriales (60%)
10 7422 bp 71.57 13.92 77.16
qh_1_scaffold_10400
Order: Natrialbales (50%)
10 7687 bp 67.32 11.46 75.48
qh_1_scaffold_3271
Order: Halobacteriales (50%)
10 8031 bp 68.20 10.70 87.11
qh_1_scaffold_3897
Species: Halomicrobium mukohataei (50%)
10 7004 bp 68.48 14.93 80.18
qh_1_scaffold_1275
Order: Halobacteriales (70%)
10 6524 bp 68.18 12.35 89.71
qh_1_scaffold_3038
Order: Halobacteriales (60%)
10 8332 bp 68.86 11.89 72.12
qh_1_scaffold_15781
Class: Halobacteria (70%)
10 4539 bp 67.94 11.30 84.93
qh_1_scaffold_8447
Order: Halobacteriales (60%)
10 6688 bp 70.83 11.71 69.26
qh_1_scaffold_4998
Order: Halobacteriales (70%)
10 8583 bp 69.30 12.44 86.54
qh_1_scaffold_1797
Order: Halobacteriales (66.67%)
9 8901 bp 71.56 12.48 92.59
qh_1_scaffold_2168
Order: Halobacteriales (100%)
9 8236 bp 68.10 12.47 87.64
qh_1_scaffold_11539
Order: Halobacteriales (66.67%)
9 6594 bp 68.43 11.22 80.12
qh_1_scaffold_4064
Order: Halobacteriales (55.56%)
9 5819 bp 68.79 12.65 88.21
qh_1_scaffold_3164
Species: Halobacterium sp. DL1 (55.56%)
9 7709 bp 64.82 10.03 89.93
qh_1_scaffold_3307
Order: Halobacteriales (55.56%)
9 5393 bp 70.98 11.83 84.22
qh_1_scaffold_5862
Order: Halobacteriales (55.56%)
9 3720 bp 64.87 11.61 90.56
qh_1_scaffold_3496
Order: Halobacteriales (55.56%)
9 9535 bp 68.75 11.93 84.89
qh_1_scaffold_7552
Order: Halobacteriales (62.5%)
8 6855 bp 69.54 12.74 82.84
qh_1_scaffold_4168
Order: Halobacteriales (87.5%)
8 7391 bp 72.71 11.78 90.72
qh_1_scaffold_1887
Order: Halobacteriales (75%)
8 6222 bp 72.24 12.34 95.81
qh_1_scaffold_3099
Order: Halobacteriales (87.5%)
8 3765 bp 68.02 16.20 100.56
qh_1_scaffold_2003
Order: Natrialbales (50%)
8 4902 bp 70.46 10.40 90.21
Displaying items 1-50 of 249 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.