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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 501-550 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_4191 4 6842 bp 55.36 20.46 74.10
qs_1_scaffold_99 28 39150 bp 54.14 22.25 74.10
qs_1_scaffold_2337
Phylum: Chlorophyta (66.67%)
3 6725 bp 54.84 21.03 74.10
qs_1_scaffold_1073 22 19131 bp 57.01 20.23 74.09
qs_1_scaffold_666 18 14977 bp 55.06 20.56 74.07
qs_1_scaffold_156 26 29072 bp 55.26 21.03 73.98
qs_1_scaffold_7462 4 3808 bp 59.85 19.25 73.98
qs_1_scaffold_579 26 26555 bp 53.90 20.35 73.95
qs_1_scaffold_932 15 12102 bp 52.90 21.05 73.90
qs_1_scaffold_1026 11 11359 bp 58.43 20.86 73.82
qs_1_scaffold_317 35 39241 bp 55.47 21.63 73.80
qs_1_scaffold_1342 17 20001 bp 53.58 20.27 73.80
qs_1_scaffold_1345 32 35939 bp 55.22 21.73 73.78
qs_1_scaffold_4291 15 10226 bp 59.28 18.33 73.75
qs_1_scaffold_1851 7 8610 bp 53.40 21.51 73.73
qs_1_scaffold_15115 5 3446 bp 57.69 16.37 73.65
qs_1_scaffold_3176 13 11333 bp 56.05 21.56 73.62
qs_1_scaffold_1595 12 14938 bp 55.28 20.56 73.52
qs_1_scaffold_361 23 26333 bp 55.35 21.40 73.48
qs_1_scaffold_2093 11 7260 bp 54.60 22.02 73.47
qs_1_scaffold_493 21 17167 bp 55.62 19.99 73.47
qs_1_scaffold_521 41 38534 bp 56.01 20.94 73.43
qs_1_scaffold_6182 11 5947 bp 57.04 18.43 73.40
qs_1_scaffold_3012
Order: Mamiellales (50%)
4 5711 bp 54.61 20.70 73.38
qs_1_scaffold_838 16 12818 bp 55.18 21.44 73.37
qs_1_scaffold_2281 4 6846 bp 56.65 18.92 73.36
qs_1_scaffold_3662
Phylum: Streptophyta (66.67%)
3 5088 bp 56.76 19.89 73.35
qs_1_scaffold_2296 9 7993 bp 54.76 20.96 73.19
qs_1_scaffold_971 23 20055 bp 55.55 21.53 73.16
qs_1_scaffold_2503
Phylum: Streptophyta (75%)
4 6428 bp 57.81 21.73 73.13
qs_1_scaffold_10468 4 3007 bp 51.11 28.60 73.13
qs_1_scaffold_1367 12 12398 bp 56.13 19.77 73.12
qs_1_scaffold_3808 3 4940 bp 55.63 19.01 73.12
qs_1_scaffold_853
Domain: Viridiplantae (52.94%)
17 24101 bp 55.09 21.64 73.10
qs_1_scaffold_849 14 12746 bp 53.95 22.08 73.06
qs_1_scaffold_286 20 26725 bp 54.78 21.51 72.99
qs_1_scaffold_4949 9 6396 bp 55.64 21.37 72.89
qs_1_scaffold_382 15 19433 bp 55.09 21.32 72.87
qs_1_scaffold_1557 10 9583 bp 56.21 19.12 72.85
qs_1_scaffold_50 54 43795 bp 55.61 21.72 72.83
qs_1_scaffold_3134 10 7295 bp 56.70 20.09 72.79
qs_1_scaffold_1961 16 10491 bp 52.52 23.34 72.78
qs_1_scaffold_1478 19 17603 bp 55.89 20.27 72.75
qs_1_scaffold_1651 11 8419 bp 57.12 21.78 72.73
qs_1_scaffold_1054 23 16243 bp 57.22 19.13 72.71
qs_1_scaffold_874 15 12565 bp 53.63 20.19 72.70
qs_1_scaffold_1837 11 11987 bp 56.97 21.64 72.65
qs_1_scaffold_847 38 34361 bp 55.34 22.09 72.65
qs_1_scaffold_4576 5 4358 bp 56.20 18.29 72.63
qs_1_scaffold_1145 13 10621 bp 52.83 20.53 72.62
Displaying items 501-550 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.