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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 751-800 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_3371 6 5351 bp 56.36 19.87 64.03
qs_1_scaffold_539 20 17428 bp 55.19 21.56 63.79
qs_1_scaffold_2983 15 8417 bp 55.93 20.02 63.73
qs_1_scaffold_6834 2 3350 bp 53.40 22.93 63.67
qs_1_scaffold_1554 9 8815 bp 51.91 23.53 63.57
qs_1_scaffold_10857 6 5517 bp 54.92 18.71 63.35
qs_1_scaffold_2273 18 12013 bp 54.61 19.61 63.26
qs_1_scaffold_580 24 27358 bp 52.98 20.93 63.24
qs_1_scaffold_714 18 16109 bp 52.91 20.24 63.04
qs_1_scaffold_2446 12 7354 bp 54.03 21.65 63.03
qs_1_scaffold_897 31 42980 bp 52.66 21.91 62.87
qs_1_scaffold_3279 12 9441 bp 54.72 19.22 62.69
qs_1_scaffold_29017
Species: Phaseolus vulgaris (50%)
2 1096 bp 62.14 22.63 62.68
qs_1_scaffold_767 33 28729 bp 54.25 21.69 62.66
qs_1_scaffold_26510
Species: Bombyx mori (50%)
2 1930 bp 58.34 6.17 62.64
qs_1_scaffold_27097
Species: Mucor circinelloides (50%)
2 1161 bp 55.21 7.49 62.53
qs_1_scaffold_27905
Species: Poecilia formosa (50%)
2 1134 bp 52.12 23.37 62.43
qs_1_scaffold_4340 8 9803 bp 54.30 18.83 62.40
qs_1_scaffold_19840
Species: Monoraphidium neglectum (50%)
2 2275 bp 50.42 20.09 62.37
qs_1_scaffold_789 21 22944 bp 52.60 22.66 62.35
qs_1_scaffold_909 17 23715 bp 54.64 23.49 62.32
qs_1_scaffold_3084 9 6472 bp 52.09 20.41 62.30
qs_1_scaffold_10008
Species: Thalassiosira pseudonana (50%)
2 2564 bp 37.05 14.78 62.25
qs_1_scaffold_2685
Domain: Viridiplantae (66.67%)
9 8541 bp 54.62 20.58 61.89
qs_1_scaffold_8303
Species: Trichomonas vaginalis (50%)
2 2914 bp 53.09 17.12 61.67
qs_1_scaffold_4395
Species: Micromonas pusilla (50%)
2 4476 bp 50.02 8.62 61.66
qs_1_scaffold_1930 8 7615 bp 54.80 20.29 61.65
qs_1_scaffold_413 18 21614 bp 54.58 20.57 61.64
qs_1_scaffold_3138 6 6860 bp 55.82 20.35 61.44
qs_1_scaffold_15762
Species: Citrus clementina (50%)
2 2478 bp 54.08 17.19 61.38
qs_1_scaffold_1336 14 13481 bp 51.82 19.73 61.29
qs_1_scaffold_5600 6 3838 bp 59.98 17.61 60.97
qs_1_scaffold_5577
Species: Micromonas sp. RCC299 (100%)
1 3848 bp 55.12 19.46 60.89
qs_1_scaffold_708 35 31146 bp 52.26 23.13 60.87
qs_1_scaffold_6248 8 6887 bp 56.38 20.96 60.77
qs_1_scaffold_742
Phylum: Chlorophyta (50%)
6 13724 bp 55.32 21.69 60.68
qs_1_scaffold_7265 8 4881 bp 54.99 18.97 60.66
qs_1_scaffold_3048 8 12043 bp 54.19 20.96 60.46
qs_1_scaffold_3529
Phylum: Chlorophyta (50%)
4 5189 bp 54.98 18.35 60.42
qs_1_scaffold_20463
Species: Leersia perrieri (50%)
2 1747 bp 57.76 15.05 60.27
qs_1_scaffold_6756
Phylum: Streptophyta (50%)
4 3375 bp 63.59 17.16 60.21
qs_1_scaffold_1118 16 10798 bp 54.57 20.63 60.21
qs_1_scaffold_3438 4 5273 bp 55.04 19.15 60.08
qs_1_scaffold_1245 9 11303 bp 55.52 22.72 60.06
qs_1_scaffold_22902
Species: Volvox carteri (100%)
1 1339 bp 53.25 21.43 60.04
qs_1_scaffold_12555 5 3176 bp 53.05 18.61 59.89
qs_1_scaffold_625 15 15123 bp 53.28 19.15 59.63
qs_1_scaffold_1943
Domain: Viridiplantae (50%)
12 13752 bp 54.29 20.96 59.47
qs_1_scaffold_3016 6 5705 bp 57.00 20.21 59.26
qs_1_scaffold_2498
Domain: Viridiplantae (50%)
4 6430 bp 53.39 22.49 59.25
Displaying items 751-800 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.