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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 101-150 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_3813 6 4935 bp 54.63 17.89 40.36
qs_1_scaffold_2364 7 6672 bp 55.76 17.93 78.73
qs_1_scaffold_3114 8 5607 bp 53.15 17.98 58.59
qs_1_scaffold_6308 3 4624 bp 53.83 18.00 65.20
qs_1_scaffold_1710 25 16315 bp 53.70 18.03 69.40
qs_1_scaffold_4580
Domain: Viridiplantae (50%)
6 4356 bp 58.86 18.09 90.15
qs_1_scaffold_7232 4 3217 bp 50.82 18.12 48.59
qs_1_scaffold_3725
Phylum: Streptophyta (66.67%)
3 5013 bp 59.07 18.13 71.04
qs_1_scaffold_6279
Genus: Ostreococcus (50%)
4 3555 bp 55.98 18.14 75.11
qs_1_scaffold_4215 5 7186 bp 54.17 18.14 57.65
qs_1_scaffold_8924
Order: Mamiellales (50%)
4 2780 bp 54.60 18.20 64.86
qs_1_scaffold_39638
Species: Picea sitchensis (50%)
2 1329 bp 55.00 18.21 47.18
qs_1_scaffold_6166
Species: Chlorella variabilis (50%)
4 4577 bp 58.01 18.24 59.12
qs_1_scaffold_3575 8 5156 bp 54.48 18.25 70.75
qs_1_scaffold_7339
Domain: Viridiplantae (50%)
4 3637 bp 64.20 18.28 66.57
qs_1_scaffold_4576 5 4358 bp 56.20 18.29 72.63
qs_1_scaffold_15354 3 3197 bp 53.64 18.30 68.41
qs_1_scaffold_4291 15 10226 bp 59.28 18.33 73.75
qs_1_scaffold_3529
Phylum: Chlorophyta (50%)
4 5189 bp 54.98 18.35 60.42
qs_1_scaffold_14193
Species: Ostreococcus tauri (50%)
2 1973 bp 55.65 18.40 65.23
qs_1_scaffold_11451
Species: Bathycoccus prasinos (50%)
2 2318 bp 52.85 18.42 58.24
qs_1_scaffold_6182 11 5947 bp 57.04 18.43 73.40
qs_1_scaffold_5380 6 5839 bp 61.07 18.43 85.60
qs_1_scaffold_3116 8 5605 bp 50.12 18.45 55.88
qs_1_scaffold_5148
Domain: Viridiplantae (57.14%)
7 6110 bp 57.69 18.53 81.21
qs_1_scaffold_1277 15 9989 bp 57.24 18.55 83.19
qs_1_scaffold_6196 5 3587 bp 56.37 18.59 77.45
qs_1_scaffold_12555 5 3176 bp 53.05 18.61 59.89
qs_1_scaffold_5179 8 4029 bp 57.83 18.62 76.99
qs_1_scaffold_5811 6 6003 bp 57.40 18.64 87.56
qs_1_scaffold_2789 5 5981 bp 56.09 18.69 69.37
qs_1_scaffold_10857 6 5517 bp 54.92 18.71 63.35
qs_1_scaffold_9663
Species: Micromonas sp. RCC299 (50%)
2 2623 bp 61.27 18.72 77.43
qs_1_scaffold_4341 4 5766 bp 53.30 18.72 33.35
qs_1_scaffold_7746 4 5054 bp 53.70 18.74 40.54
qs_1_scaffold_4286 7 4548 bp 55.21 18.76 71.24
qs_1_scaffold_13332 3 3521 bp 60.81 18.77 85.71
qs_1_scaffold_4372 7 4494 bp 53.14 18.78 56.07
qs_1_scaffold_1856
Domain: Viridiplantae (50%)
6 10691 bp 53.98 18.80 66.17
qs_1_scaffold_4883 12 7241 bp 54.92 18.82 71.05
qs_1_scaffold_4340 8 9803 bp 54.30 18.83 62.40
qs_1_scaffold_4172 7 4631 bp 54.20 18.85 67.76
qs_1_scaffold_2285
Domain: Viridiplantae (60%)
5 6838 bp 54.67 18.87 75.42
qs_1_scaffold_13215 7 5660 bp 52.28 18.89 53.11
qs_1_scaffold_1027
Phylum: Chlorophyta (50%)
8 12292 bp 55.32 18.90 85.08
qs_1_scaffold_2659 15 8374 bp 61.13 18.90 80.43
qs_1_scaffold_2281 4 6846 bp 56.65 18.92 73.36
qs_1_scaffold_2084 8 7268 bp 55.41 18.92 81.52
qs_1_scaffold_3237 14 10613 bp 53.93 18.95 65.50
qs_1_scaffold_5301 4 3974 bp 52.77 18.95 58.05
Displaying items 101-150 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.