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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 151-200 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_1829
Domain: Viridiplantae (50%)
6 7862 bp 57.07 18.96 78.76
qs_1_scaffold_7265 8 4881 bp 54.99 18.97 60.66
qs_1_scaffold_8136 6 2961 bp 56.70 18.98 67.68
qs_1_scaffold_8679
Species: Nannochloropsis gaditana (50%)
2 2828 bp 55.69 18.99 105.02
qs_1_scaffold_9914
Species: Leersia perrieri (50%)
2 2859 bp 53.86 18.99 27.81
qs_1_scaffold_7049 3 3278 bp 51.65 19.01 67.82
qs_1_scaffold_3808 3 4940 bp 55.63 19.01 73.12
qs_1_scaffold_1182 13 14610 bp 62.80 19.01 87.39
qs_1_scaffold_1702 41 31094 bp 61.27 19.03 86.25
qs_1_scaffold_12647 6 4583 bp 54.77 19.03 51.65
qs_1_scaffold_1498 15 9037 bp 56.68 19.04 75.02
qs_1_scaffold_7247 6 5945 bp 54.33 19.04 70.90
qs_1_scaffold_1557 10 9583 bp 56.21 19.12 72.85
qs_1_scaffold_7106 6 5413 bp 58.29 19.12 74.32
qs_1_scaffold_1054 23 16243 bp 57.22 19.13 72.71
qs_1_scaffold_1213
Domain: Viridiplantae (55.56%)
9 10281 bp 56.02 19.14 84.13
qs_1_scaffold_500 20 17069 bp 51.73 19.14 67.27
qs_1_scaffold_625 15 15123 bp 53.28 19.15 59.63
qs_1_scaffold_3438 4 5273 bp 55.04 19.15 60.08
qs_1_scaffold_10721 3 3518 bp 59.84 19.16 69.50
qs_1_scaffold_7650
Domain: Viridiplantae (50%)
4 5046 bp 52.66 19.16 57.55
qs_1_scaffold_3377
Phylum: Chlorophyta (66.67%)
6 7453 bp 60.22 19.17 83.97
qs_1_scaffold_4705 5 4290 bp 48.51 19.18 41.61
qs_1_scaffold_10478
Order: Mamiellales (66.67%)
3 2483 bp 50.99 19.21 57.27
qs_1_scaffold_3279 12 9441 bp 54.72 19.22 62.69
qs_1_scaffold_36024
Species: Ficedula albicollis (50%)
2 1467 bp 57.53 19.22 37.63
qs_1_scaffold_3934
Domain: Viridiplantae (66.67%)
3 7633 bp 61.04 19.23 78.06
qs_1_scaffold_2742 8 6053 bp 53.77 19.23 70.77
qs_1_scaffold_6873 4 3336 bp 56.26 19.24 84.26
qs_1_scaffold_7462 4 3808 bp 59.85 19.25 73.98
qs_1_scaffold_6011
Species: Bathycoccus prasinos (50%)
2 3655 bp 51.79 19.26 29.96
qs_1_scaffold_2735 12 13877 bp 58.42 19.27 75.97
qs_1_scaffold_4750 5 4260 bp 55.52 19.27 70.56
qs_1_scaffold_11092
Species: Ostreococcus tauri (100%)
1 2377 bp 55.53 19.27 69.92
qs_1_scaffold_1671
Domain: Viridiplantae (57.14%)
7 8350 bp 63.51 19.28 91.76
qs_1_scaffold_5345
Domain: Viridiplantae (60%)
5 4446 bp 55.22 19.28 64.17
qs_1_scaffold_6599
Class: Trebouxiophyceae (66.67%)
3 4117 bp 62.86 19.29 99.03
qs_1_scaffold_26560
Species: Tetraselmis sp. GSL018 (100%)
1 1182 bp 58.71 19.29 99.49
qs_1_scaffold_28497
Species: Aegilops tauschii (100%)
1 1114 bp 56.55 19.30 28.01
qs_1_scaffold_7588 4 4056 bp 54.86 19.30 96.38
qs_1_scaffold_2775 9 7665 bp 57.38 19.31 77.69
qs_1_scaffold_2006 13 7444 bp 56.93 19.33 74.56
qs_1_scaffold_10660
Species: Toxoplasma gondii (50%)
2 2452 bp 56.81 19.33 88.83
qs_1_scaffold_22600
Species: Auxenochlorella protothecoides (50%)
2 1354 bp 55.83 19.35 97.93
qs_1_scaffold_7629
Species: Micromonas sp. RCC299 (50%)
2 3105 bp 57.13 19.36 89.37
qs_1_scaffold_8409
Phylum: Chlorophyta (50%)
4 5585 bp 54.90 19.36 69.02
qs_1_scaffold_3447 4 5269 bp 56.29 19.37 68.27
qs_1_scaffold_14308
Species: Micromonas sp. RCC299 (50%)
2 1960 bp 61.68 19.39 94.29
qs_1_scaffold_3259 5 5452 bp 55.80 19.39 77.20
qs_1_scaffold_2791 9 10090 bp 56.54 19.41 79.62
Displaying items 151-200 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.