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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 151-200 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_17255
Species: Auxenochlorella protothecoides (50%)
2 1688 bp 53.73 21.98 64.69
qs_1_scaffold_7654 3 3553 bp 53.34 21.98 84.44
qs_1_scaffold_462 60 46057 bp 55.67 21.97 80.70
qs_1_scaffold_686 10 14258 bp 54.14 21.96 84.21
qs_1_scaffold_2486
Phylum: Chlorophyta (100%)
3 6443 bp 54.71 21.96 66.40
qs_1_scaffold_1260 15 10087 bp 54.61 21.95 81.82
qs_1_scaffold_1127
Domain: Viridiplantae (50%)
10 10740 bp 56.18 21.95 79.69
qs_1_scaffold_2694 13 15263 bp 53.33 21.94 71.82
qs_1_scaffold_302 20 21933 bp 53.73 21.94 76.49
qs_1_scaffold_1159
Domain: Viridiplantae (60%)
5 10541 bp 54.72 21.94 70.30
qs_1_scaffold_262 22 23410 bp 55.13 21.93 76.13
qs_1_scaffold_1958 8 7532 bp 56.25 21.92 86.39
qs_1_scaffold_3435 4 5275 bp 54.05 21.92 74.39
qs_1_scaffold_897 31 42980 bp 52.66 21.91 62.87
qs_1_scaffold_1824
Domain: Viridiplantae (62.5%)
8 11165 bp 58.54 21.91 86.63
qs_1_scaffold_1318 24 16549 bp 55.28 21.91 72.22
qs_1_scaffold_389 30 31977 bp 54.71 21.90 79.26
qs_1_scaffold_554 30 24126 bp 56.82 21.90 78.11
qs_1_scaffold_2206 16 14256 bp 55.26 21.89 74.50
qs_1_scaffold_1326 9 9785 bp 54.81 21.88 90.66
qs_1_scaffold_2472 8 8222 bp 53.67 21.88 44.88
qs_1_scaffold_1278 11 9987 bp 54.20 21.88 89.37
qs_1_scaffold_2593 10 7457 bp 52.55 21.87 66.38
qs_1_scaffold_1045 23 17601 bp 55.35 21.87 77.06
qs_1_scaffold_1784 9 12151 bp 54.46 21.87 72.36
qs_1_scaffold_1809
Domain: Viridiplantae (57.14%)
7 8632 bp 56.55 21.86 76.32
qs_1_scaffold_910 19 19130 bp 54.29 21.86 76.26
qs_1_scaffold_2940 13 11360 bp 57.87 21.85 82.63
qs_1_scaffold_492 28 18202 bp 56.55 21.85 74.65
qs_1_scaffold_172
Domain: Viridiplantae (50%)
28 29720 bp 55.19 21.82 74.98
qs_1_scaffold_667 28 27992 bp 54.55 21.81 74.31
qs_1_scaffold_2655
Domain: Viridiplantae (50%)
6 6176 bp 52.98 21.81 79.27
qs_1_scaffold_514 29 36793 bp 54.24 21.80 75.37
qs_1_scaffold_2891 16 18650 bp 58.92 21.80 88.05
qs_1_scaffold_1266 22 22916 bp 55.22 21.79 70.31
qs_1_scaffold_2447 3 6518 bp 55.23 21.79 89.29
qs_1_scaffold_2709 6 6093 bp 52.44 21.78 58.59
qs_1_scaffold_1651 11 8419 bp 57.12 21.78 72.73
qs_1_scaffold_3261 5 5451 bp 53.27 21.78 50.63
qs_1_scaffold_223 40 32026 bp 55.65 21.77 83.73
qs_1_scaffold_537 21 18357 bp 53.90 21.77 70.16
qs_1_scaffold_563 13 18915 bp 54.24 21.77 84.31
qs_1_scaffold_2359 5 6678 bp 53.56 21.77 68.64
qs_1_scaffold_3298 5 5426 bp 53.67 21.75 86.97
qs_1_scaffold_12864 10 5716 bp 52.61 21.75 55.42
qs_1_scaffold_426
Domain: Viridiplantae (53.33%)
30 20682 bp 51.76 21.74 80.24
qs_1_scaffold_2503
Phylum: Streptophyta (75%)
4 6428 bp 57.81 21.73 73.13
qs_1_scaffold_918 20 23050 bp 55.19 21.73 85.80
qs_1_scaffold_1038 9 11291 bp 55.07 21.73 70.78
qs_1_scaffold_899 14 20675 bp 56.24 21.73 70.98
Displaying items 151-200 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.