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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 201-250 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_1345 32 35939 bp 55.22 21.73 73.78
qs_1_scaffold_211 27 29698 bp 55.22 21.72 78.32
qs_1_scaffold_50 54 43795 bp 55.61 21.72 72.83
qs_1_scaffold_388 20 32986 bp 54.38 21.72 78.57
qs_1_scaffold_266 27 23337 bp 55.26 21.72 75.74
qs_1_scaffold_468 22 26939 bp 55.18 21.71 75.85
qs_1_scaffold_1633 19 25945 bp 54.81 21.71 68.07
qs_1_scaffold_6992 5 3938 bp 53.86 21.71 66.73
qs_1_scaffold_1966 16 18902 bp 54.73 21.71 75.66
qs_1_scaffold_1299 18 17080 bp 55.05 21.71 80.41
qs_1_scaffold_1094 12 10947 bp 56.09 21.70 66.32
qs_1_scaffold_28676
Species: Oryza barthii (50%)
2 1757 bp 54.70 21.70 55.32
qs_1_scaffold_642 15 19958 bp 54.81 21.69 70.84
qs_1_scaffold_25557
Domain: Viridiplantae (50%)
4 2190 bp 59.00 21.69 48.49
qs_1_scaffold_742
Phylum: Chlorophyta (50%)
6 13724 bp 55.32 21.69 60.68
qs_1_scaffold_767 33 28729 bp 54.25 21.69 62.66
qs_1_scaffold_1205 12 10344 bp 55.21 21.69 74.83
qs_1_scaffold_77 54 46918 bp 56.97 21.68 76.58
qs_1_scaffold_2672 10 10854 bp 54.86 21.66 78.25
qs_1_scaffold_1252 15 14645 bp 55.05 21.66 67.62
qs_1_scaffold_2446 12 7354 bp 54.03 21.65 63.03
qs_1_scaffold_321 32 36067 bp 55.16 21.65 77.38
qs_1_scaffold_1837 11 11987 bp 56.97 21.64 72.65
qs_1_scaffold_853
Domain: Viridiplantae (52.94%)
17 24101 bp 55.09 21.64 73.10
qs_1_scaffold_106 39 42629 bp 55.34 21.64 71.97
qs_1_scaffold_317 35 39241 bp 55.47 21.63 73.80
qs_1_scaffold_432 15 18451 bp 53.88 21.63 74.60
qs_1_scaffold_908 25 19494 bp 53.47 21.61 84.81
qs_1_scaffold_1355 8 11379 bp 53.55 21.61 88.06
qs_1_scaffold_1817
Domain: Viridiplantae (57.14%)
7 7907 bp 55.07 21.61 58.47
qs_1_scaffold_648 13 14727 bp 55.64 21.61 87.82
qs_1_scaffold_4279
Domain: Viridiplantae (60%)
5 4551 bp 55.39 21.60 70.07
qs_1_scaffold_863 19 13605 bp 51.29 21.60 66.73
qs_1_scaffold_1106
Phylum: Chlorophyta (50%)
6 10868 bp 55.16 21.59 72.13
qs_1_scaffold_1729 29 25460 bp 57.36 21.59 79.95
qs_1_scaffold_2074 11 14324 bp 54.27 21.58 82.48
qs_1_scaffold_226
Phylum: Chlorophyta (53.33%)
15 24758 bp 56.31 21.58 82.83
qs_1_scaffold_796 22 23206 bp 56.11 21.57 74.83
qs_1_scaffold_3176 13 11333 bp 56.05 21.56 73.62
qs_1_scaffold_539 20 17428 bp 55.19 21.56 63.79
qs_1_scaffold_2542 5 6940 bp 59.63 21.56 89.35
qs_1_scaffold_4500 4 4401 bp 53.94 21.56 71.71
qs_1_scaffold_715
Domain: Viridiplantae (50%)
8 14007 bp 54.89 21.55 94.67
qs_1_scaffold_993 9 11552 bp 56.70 21.55 80.92
qs_1_scaffold_951 18 22231 bp 55.94 21.54 66.70
qs_1_scaffold_504
Phylum: Chlorophyta (50%)
12 16931 bp 55.44 21.53 79.98
qs_1_scaffold_971 23 20055 bp 55.55 21.53 73.16
qs_1_scaffold_814
Order: Mamiellales (50%)
10 13058 bp 57.80 21.53 87.83
qs_1_scaffold_286 20 26725 bp 54.78 21.51 72.99
qs_1_scaffold_1851 7 8610 bp 53.40 21.51 73.73
Displaying items 201-250 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.