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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 251-300 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_1734 7 8111 bp 55.01 21.50 81.08
qs_1_scaffold_257 40 35021 bp 55.05 21.49 78.58
qs_1_scaffold_3226 11 10933 bp 53.75 21.49 78.29
qs_1_scaffold_436 34 25584 bp 54.49 21.49 79.12
qs_1_scaffold_1370
Domain: Viridiplantae (50%)
18 21058 bp 56.58 21.49 79.47
qs_1_scaffold_10414
Species: Tetraselmis sp. GSL018 (100%)
1 2495 bp 50.62 21.48 38.84
qs_1_scaffold_1442 13 12908 bp 55.35 21.47 75.35
qs_1_scaffold_2088 7 7265 bp 54.99 21.47 77.10
qs_1_scaffold_1767 7 8018 bp 56.98 21.47 91.05
qs_1_scaffold_200 41 37045 bp 54.41 21.47 68.45
qs_1_scaffold_2630 8 8291 bp 55.96 21.47 81.06
qs_1_scaffold_799 22 14306 bp 54.42 21.46 78.58
qs_1_scaffold_1173 15 15772 bp 55.51 21.46 64.52
qs_1_scaffold_3338 6 5378 bp 54.74 21.46 77.98
qs_1_scaffold_1873 17 11554 bp 53.76 21.46 79.56
qs_1_scaffold_592 44 39120 bp 54.40 21.45 68.03
qs_1_scaffold_5348
Species: Ostreococcus 'lucimarinus' (50%)
2 3954 bp 59.08 21.45 93.25
qs_1_scaffold_959 19 15704 bp 55.53 21.45 80.96
qs_1_scaffold_1401 12 9442 bp 54.96 21.45 71.74
qs_1_scaffold_4229 10 10794 bp 54.58 21.45 83.44
qs_1_scaffold_1032 17 20431 bp 55.58 21.44 80.17
qs_1_scaffold_838 16 12818 bp 55.18 21.44 73.37
qs_1_scaffold_530 19 17073 bp 55.74 21.44 83.55
qs_1_scaffold_1492 8 13047 bp 55.41 21.43 79.72
qs_1_scaffold_22902
Species: Volvox carteri (100%)
1 1339 bp 53.25 21.43 60.04
qs_1_scaffold_1655 11 13670 bp 56.94 21.42 67.11
qs_1_scaffold_7384
Species: Setaria italica (50%)
2 3166 bp 58.46 21.42 75.05
qs_1_scaffold_2613 7 6254 bp 55.48 21.42 77.18
qs_1_scaffold_10816 5 3690 bp 55.15 21.41 64.63
qs_1_scaffold_1085 14 11573 bp 54.61 21.41 70.12
qs_1_scaffold_2266 8 6880 bp 53.46 21.41 46.57
qs_1_scaffold_1510
Domain: Viridiplantae (55.56%)
9 8963 bp 56.22 21.40 76.25
qs_1_scaffold_361 23 26333 bp 55.35 21.40 73.48
qs_1_scaffold_305 33 37200 bp 55.97 21.40 87.17
qs_1_scaffold_225 31 35322 bp 55.73 21.39 71.64
qs_1_scaffold_710 26 33178 bp 56.12 21.38 74.53
qs_1_scaffold_11238
Species: Tetraselmis sp. GSL018 (50%)
2 2353 bp 58.31 21.38 84.40
qs_1_scaffold_275 86 84869 bp 56.12 21.38 77.03
qs_1_scaffold_1175 19 24175 bp 53.91 21.37 80.60
qs_1_scaffold_4949 9 6396 bp 55.64 21.37 72.89
qs_1_scaffold_1923 8 8395 bp 53.87 21.36 65.54
qs_1_scaffold_1180 8 10438 bp 55.17 21.35 84.50
qs_1_scaffold_1439 22 18210 bp 55.35 21.35 92.03
qs_1_scaffold_729 23 20923 bp 53.76 21.34 64.91
qs_1_scaffold_420 12 19977 bp 53.85 21.34 74.20
qs_1_scaffold_6486
Species: Ostreococcus tauri (50%)
2 3477 bp 52.37 21.34 39.43
qs_1_scaffold_4 77 80918 bp 55.70 21.34 79.86
qs_1_scaffold_122 35 31854 bp 56.14 21.33 77.62
qs_1_scaffold_382 15 19433 bp 55.09 21.32 72.87
qs_1_scaffold_1843 29 28694 bp 54.34 21.32 71.89
Displaying items 251-300 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.