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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 301-350 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_279 36 40481 bp 55.52 21.32 77.15
qs_1_scaffold_2521 9 6381 bp 56.09 21.31 57.87
qs_1_scaffold_313 20 21452 bp 56.63 21.31 83.42
qs_1_scaffold_293 41 31717 bp 54.92 21.31 76.17
qs_1_scaffold_2807 5 5960 bp 55.32 21.29 76.21
qs_1_scaffold_680
Domain: Viridiplantae (50%)
14 18683 bp 55.60 21.29 86.04
qs_1_scaffold_126 22 31155 bp 55.14 21.28 87.28
qs_1_scaffold_1518 5 8928 bp 53.07 21.28 65.76
qs_1_scaffold_4615 3 5755 bp 51.66 21.28 38.78
qs_1_scaffold_59 36 41823 bp 54.23 21.27 65.46
qs_1_scaffold_1120 30 30666 bp 56.25 21.27 77.73
qs_1_scaffold_208 66 58154 bp 57.22 21.27 80.33
qs_1_scaffold_12975
Species: Ostreococcus tauri (100%)
1 2116 bp 56.29 21.27 66.49
qs_1_scaffold_285 56 56354 bp 56.57 21.26 79.91
qs_1_scaffold_407
Domain: Viridiplantae (50%)
14 19079 bp 55.78 21.26 81.31
qs_1_scaffold_2452
Order: Mamiellales (50%)
6 6509 bp 54.56 21.25 72.27
qs_1_scaffold_5602 3 7234 bp 53.64 21.25 86.80
qs_1_scaffold_1030 11 11336 bp 53.47 21.24 76.59
qs_1_scaffold_170 27 36538 bp 55.26 21.24 85.34
qs_1_scaffold_15638
Species: Mixia osmundae (100%)
1 1827 bp 52.93 21.24 67.49
qs_1_scaffold_1288 11 10507 bp 54.48 21.24 71.81
qs_1_scaffold_1128 14 18240 bp 56.84 21.24 80.25
qs_1_scaffold_183 48 42084 bp 55.74 21.23 82.51
qs_1_scaffold_452 7 17966 bp 54.06 21.22 94.71
qs_1_scaffold_532 13 16529 bp 54.90 21.22 88.64
qs_1_scaffold_2091 22 22201 bp 59.79 21.22 89.94
qs_1_scaffold_872 18 12578 bp 54.98 21.22 68.21
qs_1_scaffold_233 31 24369 bp 55.22 21.22 83.22
qs_1_scaffold_3256
Phylum: Streptophyta (60%)
5 5456 bp 53.56 21.22 69.72
qs_1_scaffold_3378 14 11592 bp 55.20 21.20 75.93
qs_1_scaffold_1681 8 8319 bp 54.96 21.20 85.76
qs_1_scaffold_543 21 28298 bp 54.89 21.20 75.08
qs_1_scaffold_1057 18 21886 bp 54.90 21.19 84.21
qs_1_scaffold_2788 12 10248 bp 50.69 21.19 55.94
qs_1_scaffold_1549 16 16159 bp 54.08 21.19 69.16
qs_1_scaffold_314 31 36361 bp 54.76 21.19 74.21
qs_1_scaffold_546
Domain: Viridiplantae (54.55%)
11 16249 bp 55.06 21.19 71.62
qs_1_scaffold_865 24 21615 bp 56.23 21.18 77.65
qs_1_scaffold_8006
Phylum: Chlorophyta (50%)
4 2998 bp 55.54 21.18 70.85
qs_1_scaffold_871 39 42345 bp 55.49 21.18 67.93
qs_1_scaffold_307 29 23260 bp 54.24 21.18 79.71
qs_1_scaffold_3187
Domain: Viridiplantae (50%)
8 5524 bp 55.67 21.18 70.17
qs_1_scaffold_6559 5 3447 bp 54.51 21.18 96.52
qs_1_scaffold_2170 10 9111 bp 53.61 21.17 80.90
qs_1_scaffold_2355 7 6687 bp 55.91 21.16 77.57
qs_1_scaffold_675
Domain: Viridiplantae (50%)
24 27513 bp 56.20 21.16 84.15
qs_1_scaffold_96 56 52576 bp 55.87 21.15 81.93
qs_1_scaffold_2715
Phylum: Chlorophyta (54.55%)
11 12676 bp 56.32 21.15 81.72
qs_1_scaffold_2623
Order: Mamiellales (57.14%)
7 8140 bp 56.99 21.15 81.89
qs_1_scaffold_608 13 15296 bp 54.60 21.14 80.16
Displaying items 301-350 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.