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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 201-250 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_1101 8 10891 bp 55.63 19.87 83.13
qs_1_scaffold_1037 18 22047 bp 56.51 20.67 83.03
qs_1_scaffold_1081 11 12850 bp 55.37 20.88 82.95
qs_1_scaffold_5258 11 9506 bp 61.24 19.86 82.94
qs_1_scaffold_4761
Species: Coccomyxa subellipsoidea (66.67%)
6 10946 bp 60.22 19.71 82.88
qs_1_scaffold_226
Phylum: Chlorophyta (53.33%)
15 24758 bp 56.31 21.58 82.83
qs_1_scaffold_900
Domain: Viridiplantae (50%)
20 17562 bp 56.09 20.97 82.83
qs_1_scaffold_822 19 12963 bp 62.05 22.43 82.78
qs_1_scaffold_4175 5 7717 bp 57.64 20.89 82.73
qs_1_scaffold_1294 24 24040 bp 54.99 20.99 82.72
qs_1_scaffold_2940 13 11360 bp 57.87 21.85 82.63
qs_1_scaffold_4673 3 4301 bp 56.20 21.13 82.59
qs_1_scaffold_1137 9 10680 bp 56.69 21.05 82.58
qs_1_scaffold_19440
Species: Ostreococcus tauri (100%)
2 1534 bp 37.68 210.76 82.53
qs_1_scaffold_2106
Phylum: Chlorophyta (53.85%)
13 14075 bp 58.66 20.42 82.53
qs_1_scaffold_183 48 42084 bp 55.74 21.23 82.51
qs_1_scaffold_4799 7 7228 bp 59.23 20.79 82.51
qs_1_scaffold_1160 30 18476 bp 56.22 19.85 82.49
qs_1_scaffold_2074 11 14324 bp 54.27 21.58 82.48
qs_1_scaffold_50937
Species: Auxenochlorella protothecoides (50%)
2 1328 bp 34.49 123.49 82.45
qs_1_scaffold_6905
Species: Ostreococcus 'lucimarinus' (50%)
2 3326 bp 56.83 19.78 82.44
qs_1_scaffold_6892 3 3330 bp 56.67 20.84 82.43
qs_1_scaffold_421 17 18790 bp 54.44 22.86 82.42
qs_1_scaffold_2922 8 5802 bp 61.88 20.94 82.40
qs_1_scaffold_7115
Species: Suillus luteus (50%)
2 3256 bp 49.97 15.17 82.37
qs_1_scaffold_18126
Species: Thalassiosira pseudonana (50%)
2 1625 bp 56.74 14.58 82.34
qs_1_scaffold_734 15 16189 bp 55.51 22.38 82.32
qs_1_scaffold_576 18 16867 bp 54.84 20.61 82.31
qs_1_scaffold_1091
Domain: Viridiplantae (52.38%)
21 24289 bp 56.13 20.61 82.27
qs_1_scaffold_585 16 15638 bp 53.84 20.99 82.24
qs_1_scaffold_3311 17 14694 bp 61.39 19.93 82.22
qs_1_scaffold_12452 5 3476 bp 54.09 20.91 82.16
qs_1_scaffold_1957 10 7534 bp 52.47 24.22 82.11
qs_1_scaffold_3606 6 5131 bp 55.62 23.27 82.03
qs_1_scaffold_241 28 24039 bp 56.92 20.64 82.03
qs_1_scaffold_22680
Species: Cucumis sativus (50%)
2 1350 bp 62.81 11.56 82.00
qs_1_scaffold_1430 11 9322 bp 56.49 20.89 82.00
qs_1_scaffold_1450 14 14635 bp 57.23 20.06 82.00
qs_1_scaffold_1484 13 14279 bp 55.90 20.29 81.94
qs_1_scaffold_96 56 52576 bp 55.87 21.15 81.93
qs_1_scaffold_2623
Order: Mamiellales (57.14%)
7 8140 bp 56.99 21.15 81.89
qs_1_scaffold_2089 7 7263 bp 55.68 19.81 81.87
qs_1_scaffold_1343
Phylum: Chlorophyta (50%)
8 9702 bp 56.87 20.13 81.85
qs_1_scaffold_9733
Phylum: Chlorophyta (66.67%)
3 2610 bp 53.60 20.34 81.84
qs_1_scaffold_1260 15 10087 bp 54.61 21.95 81.82
qs_1_scaffold_26425
Species: Monoraphidium neglectum (50%)
2 1188 bp 60.94 7.74 81.82
qs_1_scaffold_428 24 26849 bp 55.40 20.90 81.81
qs_1_scaffold_2249 12 13259 bp 55.24 20.61 81.75
qs_1_scaffold_2715
Phylum: Chlorophyta (54.55%)
11 12676 bp 56.32 21.15 81.72
qs_1_scaffold_6453 6 4868 bp 60.21 17.15 81.59
Displaying items 201-250 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.