ggKbase home page
Advanced Search
Search Help

QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 151-200 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_1996
Domain: Viridiplantae (55.56%)
9 9600 bp 59.30 20.73 85.50
qs_1_scaffold_2640 9 8290 bp 56.57 20.63 85.44
qs_1_scaffold_1201 21 24452 bp 57.57 19.49 85.43
qs_1_scaffold_5230
Species: Coccomyxa subellipsoidea (50%)
4 4014 bp 60.61 17.81 85.43
qs_1_scaffold_3550 5 10148 bp 56.13 21.00 85.38
qs_1_scaffold_170 27 36538 bp 55.26 21.24 85.34
qs_1_scaffold_1305 19 20733 bp 61.76 20.32 85.31
qs_1_scaffold_6024
Species: Micromonas sp. RCC299 (50%)
2 3651 bp 55.77 20.98 85.13
qs_1_scaffold_1340 11 9722 bp 55.59 20.03 85.11
qs_1_scaffold_1027
Phylum: Chlorophyta (50%)
8 12292 bp 55.32 18.90 85.08
qs_1_scaffold_425
Domain: Viridiplantae (56.25%)
16 18698 bp 54.74 20.93 84.91
qs_1_scaffold_775
Domain: Viridiplantae (53.85%)
13 19373 bp 56.13 20.77 84.88
qs_1_scaffold_2215
Phylum: Chlorophyta (50%)
4 6975 bp 59.17 23.21 84.86
qs_1_scaffold_719 24 20997 bp 54.84 22.64 84.83
qs_1_scaffold_908 25 19494 bp 53.47 21.61 84.81
qs_1_scaffold_10526 4 3433 bp 54.97 19.72 84.68
qs_1_scaffold_1180 8 10438 bp 55.17 21.35 84.50
qs_1_scaffold_7654 3 3553 bp 53.34 21.98 84.44
qs_1_scaffold_11238
Species: Tetraselmis sp. GSL018 (50%)
2 2353 bp 58.31 21.38 84.40
qs_1_scaffold_3829
Phylum: Chlorophyta (50%)
4 4919 bp 54.34 23.09 84.35
qs_1_scaffold_2855 9 6613 bp 57.45 20.02 84.33
qs_1_scaffold_154 51 65584 bp 53.90 21.04 84.32
qs_1_scaffold_563 13 18915 bp 54.24 21.77 84.31
qs_1_scaffold_3083 5 5639 bp 54.00 22.50 84.27
qs_1_scaffold_6873 4 3336 bp 56.26 19.24 84.26
qs_1_scaffold_1057 18 21886 bp 54.90 21.19 84.21
qs_1_scaffold_686 10 14258 bp 54.14 21.96 84.21
qs_1_scaffold_3148 4 7501 bp 55.29 20.06 84.15
qs_1_scaffold_675
Domain: Viridiplantae (50%)
24 27513 bp 56.20 21.16 84.15
qs_1_scaffold_1213
Domain: Viridiplantae (55.56%)
9 10281 bp 56.02 19.14 84.13
qs_1_scaffold_724 17 21443 bp 55.48 20.76 84.03
qs_1_scaffold_3377
Phylum: Chlorophyta (66.67%)
6 7453 bp 60.22 19.17 83.97
qs_1_scaffold_740 10 13762 bp 54.72 21.04 83.95
qs_1_scaffold_2231 10 6931 bp 56.87 20.11 83.84
qs_1_scaffold_2353
Domain: Viridiplantae (50%)
8 8199 bp 57.19 19.90 83.83
qs_1_scaffold_223 40 32026 bp 55.65 21.77 83.73
qs_1_scaffold_1582 17 12977 bp 60.82 20.24 83.59
qs_1_scaffold_530 19 17073 bp 55.74 21.44 83.55
qs_1_scaffold_5613
Species: Citrus clementina (50%)
2 3833 bp 57.34 22.31 83.51
qs_1_scaffold_5769 8 7327 bp 55.11 19.96 83.49
qs_1_scaffold_184 45 44733 bp 54.72 20.73 83.46
qs_1_scaffold_925 13 13248 bp 55.66 19.58 83.45
qs_1_scaffold_4229 10 10794 bp 54.58 21.45 83.44
qs_1_scaffold_313 20 21452 bp 56.63 21.31 83.42
qs_1_scaffold_27292
Species: Micromonas sp. RCC299 (50%)
2 1155 bp 59.74 16.54 83.38
qs_1_scaffold_306 33 25855 bp 54.74 20.94 83.35
qs_1_scaffold_749 16 14186 bp 54.85 24.73 83.28
qs_1_scaffold_233 31 24369 bp 55.22 21.22 83.22
qs_1_scaffold_1277 15 9989 bp 57.24 18.55 83.19
qs_1_scaffold_251
Domain: Viridiplantae (57.14%)
14 23714 bp 56.54 21.03 83.19
Displaying items 151-200 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.