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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 301-350 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_17343
Phylum: Streptophyta (50%)
4 3152 bp 58.95 16.47 80.04
qs_1_scaffold_601 21 18727 bp 53.96 22.22 80.00
qs_1_scaffold_10065 9 3585 bp 56.09 20.53 80.00
qs_1_scaffold_504
Phylum: Chlorophyta (50%)
12 16931 bp 55.44 21.53 79.98
qs_1_scaffold_1729 29 25460 bp 57.36 21.59 79.95
qs_1_scaffold_285 56 56354 bp 56.57 21.26 79.91
qs_1_scaffold_4 77 80918 bp 55.70 21.34 79.86
qs_1_scaffold_2717 3 7373 bp 61.63 20.40 79.83
qs_1_scaffold_1003 12 11512 bp 56.81 20.27 79.82
qs_1_scaffold_2138 13 8786 bp 56.12 20.98 79.73
qs_1_scaffold_1492 8 13047 bp 55.41 21.43 79.72
qs_1_scaffold_307 29 23260 bp 54.24 21.18 79.71
qs_1_scaffold_1127
Domain: Viridiplantae (50%)
10 10740 bp 56.18 21.95 79.69
qs_1_scaffold_1601
Domain: Viridiplantae (50%)
8 11749 bp 55.77 21.98 79.69
qs_1_scaffold_117 35 32849 bp 56.40 20.92 79.67
qs_1_scaffold_2018 9 7412 bp 54.57 20.71 79.65
qs_1_scaffold_2791 9 10090 bp 56.54 19.41 79.62
qs_1_scaffold_4012 5 4768 bp 55.41 25.93 79.59
qs_1_scaffold_2453
Domain: Viridiplantae (50%)
6 7174 bp 54.86 19.74 79.58
qs_1_scaffold_1873 17 11554 bp 53.76 21.46 79.56
qs_1_scaffold_150
Domain: Viridiplantae (63.33%)
30 29551 bp 55.98 21.03 79.54
qs_1_scaffold_547 26 31283 bp 60.95 20.17 79.50
qs_1_scaffold_893 13 12397 bp 59.09 22.08 79.47
qs_1_scaffold_1370
Domain: Viridiplantae (50%)
18 21058 bp 56.58 21.49 79.47
qs_1_scaffold_10552
Species: Eucalyptus grandis (50%)
2 2469 bp 59.25 16.44 79.47
qs_1_scaffold_618 12 15186 bp 57.92 20.35 79.45
qs_1_scaffold_1645 14 10195 bp 60.13 30.66 79.45
qs_1_scaffold_2655
Domain: Viridiplantae (50%)
6 6176 bp 52.98 21.81 79.27
qs_1_scaffold_389 30 31977 bp 54.71 21.90 79.26
qs_1_scaffold_587 18 15611 bp 54.12 20.97 79.19
qs_1_scaffold_436 34 25584 bp 54.49 21.49 79.12
qs_1_scaffold_2800 7 7074 bp 62.71 20.53 79.09
qs_1_scaffold_51 52 54396 bp 54.98 23.58 79.02
qs_1_scaffold_3996 9 4781 bp 54.72 20.64 79.00
qs_1_scaffold_685 13 14261 bp 53.99 20.03 78.91
qs_1_scaffold_1225 28 23610 bp 55.47 20.60 78.91
qs_1_scaffold_846 13 12772 bp 54.81 20.24 78.86
qs_1_scaffold_120 27 32005 bp 57.58 20.94 78.85
qs_1_scaffold_892
Domain: Viridiplantae (61.9%)
21 27239 bp 54.53 22.16 78.85
qs_1_scaffold_5817
Phylum: Streptophyta (50%)
6 4645 bp 60.65 19.88 78.79
qs_1_scaffold_598 34 34397 bp 54.44 20.65 78.78
qs_1_scaffold_1829
Domain: Viridiplantae (50%)
6 7862 bp 57.07 18.96 78.76
qs_1_scaffold_2364 7 6672 bp 55.76 17.93 78.73
qs_1_scaffold_257 40 35021 bp 55.05 21.49 78.58
qs_1_scaffold_799 22 14306 bp 54.42 21.46 78.58
qs_1_scaffold_388 20 32986 bp 54.38 21.72 78.57
qs_1_scaffold_4295 6 4542 bp 53.48 19.99 78.53
qs_1_scaffold_3878 5 4886 bp 57.14 23.00 78.53
qs_1_scaffold_1113 48 38724 bp 55.68 20.25 78.51
qs_1_scaffold_8339
Domain: Viridiplantae (60%)
5 5262 bp 56.18 19.50 78.51
Displaying items 301-350 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.