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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 351-400 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_3844 5 5605 bp 51.76 22.60 78.47
qs_1_scaffold_5195 7 7346 bp 56.13 20.88 78.37
qs_1_scaffold_1104 23 17858 bp 53.57 20.67 78.37
qs_1_scaffold_211 27 29698 bp 55.22 21.72 78.32
qs_1_scaffold_3226 11 10933 bp 53.75 21.49 78.29
qs_1_scaffold_2672 10 10854 bp 54.86 21.66 78.25
qs_1_scaffold_1155 11 10994 bp 55.86 20.73 78.23
qs_1_scaffold_1116
Domain: Viridiplantae (50%)
28 24787 bp 56.11 20.74 78.22
qs_1_scaffold_2066 13 7294 bp 53.93 22.57 78.19
qs_1_scaffold_2485
Phylum: Chlorophyta (66.67%)
3 6452 bp 60.14 19.85 78.16
qs_1_scaffold_487 28 26313 bp 56.59 21.07 78.13
qs_1_scaffold_12232
Species: Ostreococcus tauri (100%)
1 2204 bp 60.03 9.98 78.13
qs_1_scaffold_554 30 24126 bp 56.82 21.90 78.11
qs_1_scaffold_47 55 53821 bp 56.47 20.47 78.08
qs_1_scaffold_3934
Domain: Viridiplantae (66.67%)
3 7633 bp 61.04 19.23 78.06
qs_1_scaffold_2641 20 15326 bp 54.52 21.13 78.04
qs_1_scaffold_2991 9 10727 bp 55.09 19.85 78.03
qs_1_scaffold_424
Domain: Viridiplantae (53.33%)
15 18721 bp 57.89 20.38 78.01
qs_1_scaffold_626 12 15116 bp 54.42 22.08 78.00
qs_1_scaffold_3338 6 5378 bp 54.74 21.46 77.98
qs_1_scaffold_87 61 58011 bp 57.26 20.90 77.84
qs_1_scaffold_158 35 47238 bp 55.50 20.94 77.80
qs_1_scaffold_81 69 68826 bp 55.80 20.71 77.79
qs_1_scaffold_1120 30 30666 bp 56.25 21.27 77.73
qs_1_scaffold_263 21 28310 bp 55.81 20.43 77.72
qs_1_scaffold_2775 9 7665 bp 57.38 19.31 77.69
qs_1_scaffold_865 24 21615 bp 56.23 21.18 77.65
qs_1_scaffold_451
Domain: Viridiplantae (50%)
22 25054 bp 55.76 22.26 77.65
qs_1_scaffold_122 35 31854 bp 56.14 21.33 77.62
qs_1_scaffold_20178
Phylum: Chlorophyta (50%)
4 2297 bp 56.16 16.28 77.58
qs_1_scaffold_2355 7 6687 bp 55.91 21.16 77.57
qs_1_scaffold_1170
Phylum: Chlorophyta (66.67%)
3 10494 bp 55.35 21.06 77.50
qs_1_scaffold_1786 21 18031 bp 55.58 20.09 77.47
qs_1_scaffold_10034 5 3184 bp 60.74 17.09 77.45
qs_1_scaffold_6196 5 3587 bp 56.37 18.59 77.45
qs_1_scaffold_9663
Species: Micromonas sp. RCC299 (50%)
2 2623 bp 61.27 18.72 77.43
qs_1_scaffold_1226 6 10221 bp 53.78 22.40 77.43
qs_1_scaffold_2188
Phylum: Chlorophyta (66.67%)
6 9842 bp 56.34 19.96 77.39
qs_1_scaffold_4942
Domain: Viridiplantae (62.5%)
8 9726 bp 55.77 20.50 77.39
qs_1_scaffold_321 32 36067 bp 55.16 21.65 77.38
qs_1_scaffold_16104
Species: Yarrowia lipolytica (50%)
2 1784 bp 56.61 5.44 77.35
qs_1_scaffold_343
Domain: Viridiplantae (52.63%)
19 20769 bp 55.83 20.40 77.28
qs_1_scaffold_3246
Domain: Viridiplantae (60%)
5 5467 bp 65.78 16.72 77.26
qs_1_scaffold_291 29 26289 bp 55.11 21.06 77.22
qs_1_scaffold_3259 5 5452 bp 55.80 19.39 77.20
qs_1_scaffold_2613 7 6254 bp 55.48 21.42 77.18
qs_1_scaffold_279 36 40481 bp 55.52 21.32 77.15
qs_1_scaffold_80 44 38214 bp 55.55 20.86 77.14
qs_1_scaffold_2088 7 7265 bp 54.99 21.47 77.10
qs_1_scaffold_5590 6 7100 bp 55.86 20.53 77.07
Displaying items 351-400 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.