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QS_3_Halobacteriales_64_16

In projects: QS_3  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Displaying items 1-50 of 70 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_3_scaffold_424
Order: Halobacteriales (75%)
16 15135 bp 64.53 17.01 90.64
qs_3_scaffold_77
Order: Halobacteriales (52.94%)
51 59983 bp 64.90 15.96 90.60
qs_3_scaffold_1240
Order: Halobacteriales (57.14%)
7 6194 bp 65.14 15.97 89.80
qs_3_scaffold_1347
Order: Halobacteriales (50%)
8 5786 bp 62.69 16.51 89.53
qs_3_scaffold_736
Order: Halobacteriales (53.33%)
15 15499 bp 63.50 15.12 89.25
qs_3_scaffold_339
Order: Halobacteriales (60%)
15 15207 bp 65.44 16.23 89.19
qs_3_scaffold_671
Class: Halobacteria (100%)
13 11923 bp 65.50 17.10 89.12
qs_3_scaffold_255
Order: Halobacteriales (55%)
20 18181 bp 64.30 15.49 88.97
qs_3_scaffold_64
Order: Halobacteriales (54.55%)
55 63925 bp 63.73 15.80 88.86
qs_3_scaffold_215
Order: Halobacteriales (55.56%)
18 19992 bp 64.98 15.96 88.75
qs_3_scaffold_75
Order: Halobacteriales (54.55%)
44 36767 bp 62.14 15.33 88.60
qs_3_scaffold_345
Order: Halobacteriales (50%)
24 30386 bp 64.68 15.60 88.52
qs_3_scaffold_468
Order: Halobacteriales (61.54%)
13 12463 bp 64.30 15.97 88.46
qs_3_scaffold_476
Order: Halobacteriales (56.67%)
30 22430 bp 64.20 15.53 88.26
qs_3_scaffold_228
Class: Halobacteria (76.19%)
21 19395 bp 63.86 16.39 87.94
qs_3_scaffold_105
Order: Halobacteriales (65.31%)
49 48421 bp 64.63 16.13 87.92
qs_3_scaffold_12
Order: Halobacteriales (57.14%)
154 138982 bp 64.59 16.58 87.75
qs_3_scaffold_230
Order: Halobacteriales (62.5%)
56 61163 bp 65.42 15.59 87.45
qs_3_scaffold_117
Class: Halobacteria (58.62%)
29 28341 bp 63.83 16.29 87.06
qs_3_scaffold_748
Class: Halobacteria (78.57%)
14 9914 bp 64.01 16.28 86.94
qs_3_scaffold_193
Class: Halobacteria (74.07%)
27 26057 bp 64.43 16.03 86.90
qs_3_scaffold_112
Order: Halobacteriales (63.89%)
36 33113 bp 63.30 16.26 86.80
qs_3_scaffold_1883
Class: Halobacteria (57.14%)
7 4345 bp 63.68 16.29 86.58
qs_3_scaffold_30
Order: Halobacteriales (58.82%)
85 86231 bp 63.67 16.11 86.33
qs_3_scaffold_57
Order: Halobacteriales (58.82%)
68 62278 bp 64.34 16.66 86.31
qs_3_scaffold_26
Order: Halobacteriales (61.82%)
55 53998 bp 63.52 17.24 86.25
qs_3_scaffold_167
Order: Halobacteriales (56.76%)
74 69687 bp 63.50 15.74 86.25
qs_3_scaffold_996
Genus: Halococcus (61.54%)
13 12289 bp 64.85 15.06 86.22
qs_3_scaffold_82
Order: Halobacteriales (68.29%)
41 45030 bp 64.65 16.68 86.14
qs_3_scaffold_525
Class: Halobacteria (75%)
8 11553 bp 64.94 15.80 86.00
qs_3_scaffold_10
Class: Halobacteria (90.48%)
210 205582 bp 63.89 15.98 85.92
qs_3_scaffold_16
Class: Halobacteria (87.23%)
94 87645 bp 64.42 16.85 85.69
qs_3_scaffold_269
Order: Halobacteriales (59.65%)
57 57700 bp 63.52 16.00 85.67
qs_3_scaffold_127
Order: Halobacteriales (54.9%)
51 53660 bp 64.74 15.72 85.57
qs_3_scaffold_463
Class: Halobacteria (82.14%)
28 23976 bp 64.46 15.92 85.36
qs_3_scaffold_1312
Order: Halobacteriales (50%)
8 5958 bp 63.91 16.36 85.30
qs_3_scaffold_129
Order: Halobacteriales (64.04%)
89 88921 bp 64.57 15.96 85.29
qs_3_scaffold_376
Order: Halobacteriales (62.5%)
16 14281 bp 64.32 15.01 85.12
qs_3_scaffold_401
Genus: Halococcus (58.7%)
46 33735 bp 64.17 16.71 85.05
qs_3_scaffold_747
Order: Halobacteriales (56.25%)
16 15246 bp 64.38 15.40 84.91
qs_3_scaffold_79
Class: Halobacteria (82.76%)
58 62972 bp 64.04 16.46 84.90
qs_3_scaffold_284
Order: Halobacteriales (55.56%)
54 45591 bp 64.07 16.39 84.63
qs_3_scaffold_367
Order: Halobacteriales (59.46%)
37 41300 bp 63.19 15.42 84.62
qs_3_scaffold_93
Order: Halobacteriales (58.82%)
51 53617 bp 64.26 15.80 84.51
qs_3_scaffold_65
Order: Halobacteriales (65.33%)
75 66756 bp 63.71 16.25 84.42
qs_3_scaffold_348
Order: Halobacteriales (50%)
18 15072 bp 63.15 15.96 84.39
qs_3_scaffold_100
Order: Halobacteriales (51.39%)
72 68379 bp 63.23 16.36 84.32
qs_3_scaffold_59
Order: Halobacteriales (60%)
75 70292 bp 63.21 15.79 84.06
qs_3_scaffold_383
Genus: Halococcus (56.25%)
32 25051 bp 63.51 16.02 84.00
qs_3_scaffold_56
Order: Halobacteriales (54.84%)
124 119817 bp 63.81 16.15 83.94
Displaying items 1-50 of 70 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.