ggKbase home page

qs_4_scaffold_487

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_4_scaffold_487_1
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(60..740)
DNA (681bp) protein (227aa)
CRISPR-associated protein Cas6 n=1 Tax=Salisaeta longa RepID=UPI0003B445BC
Uncharacterized protein {ECO:0000313|EMBL:CCH56580.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
CRISPR-associated protein Cas6
qs_4_scaffold_487_2
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(731..1072)
DNA (342bp) protein (114aa)
CRISPR-associated protein Cas6 n=1 Tax=Salisaeta longa RepID=UPI0003B445BC
Uncharacterized protein {ECO:0000313|EMBL:CCH56580.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
CRISPR-associated protein Cas6
qs_4_scaffold_487_3
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1083..2129)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B35C93
Uncharacterized protein {ECO:0000313|EMBL:CCH51598.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
transcriptional regulator protein-like protein
qs_4_scaffold_487_trna_2
unknown

Not on your lists

comp(2578..2651)
DNA (74bp)
transferRNA
qs_4_scaffold_487_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

2802..3875
DNA (1074bp) protein (358aa)
abortive infection protein n=1 Tax=Salisaeta longa RepID=UPI0003B53477
hypothetical protein
Membrane protein, putative {ECO:0000313|EMBL:ABC46070.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter r
qs_4_scaffold_487_5
unknown

Not on your lists

comp(3935..4285)
DNA (351bp) protein (117aa)

This feature has no annotations

qs_4_scaffold_487_6
unknown

Not on your lists

4299..4508
DNA (210bp) protein (70aa)

This feature has no annotations

qs_4_scaffold_487_7
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

4568..5452
DNA (885bp) protein (295aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order
Phosphatidate cytidylyltransferase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MH97_RHOM4
phosphatidate cytidylyltransferase
qs_4_scaffold_487_8
unknown

Not on your lists

5744..5959
DNA (216bp) protein (72aa)

This feature has no annotations

qs_4_scaffold_487_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

6019..7956
DNA (1938bp) protein (646aa)
DNA mismatch repair protein MutL n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H9Y5_SALRM
mutL; DNA mismatch repair protein mutL
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermacea
qs_4_scaffold_487_10
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8029..8994
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LZ71_HALO1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY16333.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium
qs_4_scaffold_487_11
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

9050..10510
DNA (1461bp) protein (487aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine
tRNA(Ile)-lysidine synthase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H9Y4_SALRM
mesJ; cell cycle protein MesJ
qs_4_scaffold_487_12
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

10626..11219
DNA (594bp) protein (198aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:ACY47859.1}; EC=2.4.2.8 {ECO:0000313|EMBL:ACY47859.1};; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis;
Hypoxanthine phosphoribosyltransferase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MHA1_RHOM4
hypoxanthine phosphoribosyltransferase
qs_4_scaffold_487_13
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

11375..11599
DNA (225bp) protein (75aa)
cold-shock protein n=1 Tax=Gracilimonas tropica RepID=UPI000374D986
cold-shock DNA-binding domain-containing protein
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:AEN72064.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rho
qs_4_scaffold_487_14
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(11791..13188)
DNA (1398bp) protein (466aa)
phosphohydrolase
phosphohydrolase; K06885 id=24659667 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Phosphohydrolase {ECO:0000313|EMBL:CBH24833.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (stra
qs_4_scaffold_487_15
Synechococcus sp. PCC 6312, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(13321..14082)
DNA (762bp) protein (254aa)
Putative secreted Zn-dependent protease n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) RepID=K9RV72_SYNP3
putative secreted Zn-dependent protease
Putative secreted Zn-dependent protease {ECO:0000313|EMBL:AFY61007.1}; Flags: Precursor;; TaxID=195253 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="
qs_4_scaffold_487_16
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(14122..14988)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H9X7_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24832.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_4_scaffold_487_17
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(15100..15804)
DNA (705bp) protein (235aa)
Phosphatidate cytidylyltransferase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SKI8_RHOMR
phosphatidate cytidylyltransferase
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:AEN73542.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodot
qs_4_scaffold_487_18
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

16035..16970
DNA (936bp) protein (312aa)
Protein serine/threonine phosphatase n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QSB3_9CYAN
protein serine/threonine phosphatase
Protein serine/threonine phosphatase {ECO:0000313|EMBL:AGY60610.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;
qs_4_scaffold_487_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

17025..19634
DNA (2610bp) protein (870aa)
permease n=1 Tax=Salisaeta longa RepID=UPI0003B64C57
permease
Putative permease domain protein {ECO:0000313|EMBL:ABC44243.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Saliniba
qs_4_scaffold_487_20
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

20108..21388
DNA (1281bp) protein (427aa)
hydrolase n=1 Tax=Salisaeta longa RepID=UPI0003B7AE85
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC45226.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_4_scaffold_487_21
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

21450..21920
DNA (471bp) protein (157aa)
hypothetical protein id=24659276 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24442.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_4_scaffold_487_22
unknown

Not on your lists

22115..22471
DNA (357bp) protein (119aa)

This feature has no annotations

qs_4_scaffold_487_23
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

22461..23582
DNA (1122bp) protein (374aa)
3''''-5''''-bisphosphate nucleotidase n=1 Tax=Salisaeta longa RepID=UPI0003B65D08
3'(2'),5'-bisphosphate nucleotidase
3'(2'),5'-bisphosphate nucleotidase {ECO:0000313|EMBL:ACY49298.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodo
qs_4_scaffold_487_24
Prevotella sp. CAG:891, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23708..24157
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Prevotella sp. CAG:891 RepID=R7LEB4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDE86298.1}; TaxID=1262937 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotel
cytidine deaminase
qs_4_scaffold_487_25
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(24286..25113)
DNA (828bp) protein (276aa)
dihydroorotate dehydrogenase n=1 Tax=Salisaeta longa RepID=UPI0003B66D31
gufA; gufA protein
GufA protein {ECO:0000313|EMBL:ABC43711.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain D
qs_4_scaffold_487_26
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

25358..26065
DNA (708bp) protein (236aa)
ideR; Iron dependent repressor
ideR; Iron dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator id=24657978 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Iron dependent repressor {ECO:0000313|EMBL:CBH25181.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rub
qs_4_scaffold_487_27
Nostoc sp. PCC 7107, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(26075..26677)
DNA (603bp) protein (201aa)
Peptidylprolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; Flags: Precursor;; TaxID=317936 species="Bacteria; Cyanobacteria; Nostocales; Nostocac
peptidylprolyl isomerase n=1 Tax=Acaryochloris sp. CCMEE 5410 RepID=UPI0002484748
qs_4_scaffold_487_28
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(26840..27700)
DNA (861bp) protein (287aa)
Aspartate racemase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MF40_RHOM4
aspartate racemase
Aspartate racemase {ECO:0000313|EMBL:ACY49296.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (
qs_4_scaffold_487_trna_1
unknown

Not on your lists

27999..28069
DNA (71bp)
transferRNA
Displaying items 1-30 of 31 in total

View Taxonomy