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qs_4_scaffold_738

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Displaying items 1-30 of 50 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_4_scaffold_738_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

1..648
DNA (648bp) protein (216aa)
hypothetical protein; K14415 tRNA-splicing ligase RtcB [EC:6.5.1.3] id=24658438 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodotherm
hypothetical protein
qs_4_scaffold_738_2
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(762..1469)
DNA (708bp) protein (236aa)
transcriptional regulator n=1 Tax=Salisaeta longa RepID=UPI0003B7ABC6
drrA; response regulator DrrA
Response regulator DrrA {ECO:0000313|EMBL:CBH25628.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_4_scaffold_738_3
Rhodopirellula baltica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

1780..2997
DNA (1218bp) protein (406aa)
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:EKK03571.1}; EC=3.1.4.12 {ECO:0000313|EMBL:EKK03571.1};; TaxID=993517 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planct
Endonuclease/exonuclease/phosphatase n=1 Tax=Rhodopirellula baltica SH28 RepID=K5ECG7_RHOBT
hypothetical protein
qs_4_scaffold_738_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

2999..3916
DNA (918bp) protein (306aa)
Phosphatidylcholine synthase {ECO:0000313|EMBL:CBH23340.1}; EC=2.7.8.24 {ECO:0000313|EMBL:CBH23340.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodother
Phosphatidylcholine synthase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H5N5_SALRM
pssA; phosphatidylcholine synthase
qs_4_scaffold_738_5
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

3909..4787
DNA (879bp) protein (293aa)
Squalene/phytoene synthase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MI49_RHOM4
squalene/phytoene synthase
Squalene/phytoene synthase {ECO:0000313|EMBL:ACY48157.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus m
qs_4_scaffold_738_6
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

4904..5914
DNA (1011bp) protein (337aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synth
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SF18_RHOMR
qs_4_scaffold_738_7
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

6109..6798
DNA (690bp) protein (230aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MI51_RHOM4
acyl-phosphate glycerol-3-phosphate acyltransferase
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:000025
qs_4_scaffold_738_8
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

6891..7910
DNA (1020bp) protein (340aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SF20_RHOMR
glycerol-3-phosphate dehydrogenase (NAD(P)+)
qs_4_scaffold_738_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

8028..8711
DNA (684bp) protein (228aa)
transcriptional regulator n=1 Tax=Salisaeta longa RepID=UPI0003B36AC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24596.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_4_scaffold_738_10
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

8772..9191
DNA (420bp) protein (140aa)
S23 ribosomal protein Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
hypothetical protein id=14425926 bin=bin1_lowGC species=Dyadobacter beijingensis genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=bin1_lowGC organism_group=Unknown_CP
S23 ribosomal protein
qs_4_scaffold_738_11
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


9348..11699
DNA (2352bp) protein (784aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis
Type II DNA topoisomerase, A subunit n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S2H4_SALRD
type II DNA topoisomerase, A subunit
qs_4_scaffold_738_12
unknown

Not on your lists

11700..11966
DNA (267bp) protein (89aa)

This feature has no annotations

qs_4_scaffold_738_13
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(11901..12788)
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B7047B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN73245.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus mari
qs_4_scaffold_738_trna_1
unknown

Not on your lists

12875..12948
DNA (74bp)
transferRNA
qs_4_scaffold_738_14
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

13032..13658
DNA (627bp) protein (209aa)
hypothetical protein
hypothetical protein id=24659535 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH24700.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_4_scaffold_738_15
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

13827..14708
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B359F2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24936.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_4_scaffold_738_16
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(14734..15117)
DNA (384bp) protein (128aa)
Putative fluoride ion transporter CrcB n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HC42_SALRM
crcB1; CrcB-like protein
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source
qs_4_scaffold_738_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

15247..16002
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B46B08
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24433.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_4_scaffold_738_18
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16154..17587
DNA (1434bp) protein (478aa)
DNA mismatch repair protein MutS n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H9M4_SALRM
mutS; DNA mismatch repair protein MutS
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermacea
qs_4_scaffold_738_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

17848..18891
DNA (1044bp) protein (348aa)
mutS; DNA mismatch repair protein MutS
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS id=24659565 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermacea
qs_4_scaffold_738_20
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19119..20087
DNA (969bp) protein (323aa)
Diacylglycerol kinase catalytic region n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B5F5_HERA2
Transcription regulator {ECO:0000313|EMBL:EYF05822.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondrom
diacylglycerol kinase catalytic protein
qs_4_scaffold_738_21
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

20184..21077
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B56E4A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC43713.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_4_scaffold_738_22
unknown

Not on your lists

comp(21127..21768)
DNA (642bp) protein (214aa)

This feature has no annotations

qs_4_scaffold_738_23
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(21935..22669)
DNA (735bp) protein (245aa)
nodB; chitooligosaccharide deacetylase
nodB; chitooligosaccharide deacetylase id=24659823 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Chitooligosaccharide deacetylase {ECO:0000313|EMBL:CBH24994.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Saliniba
qs_4_scaffold_738_24
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22673..23959)
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B6F5CA
Contig25, whole genome shotgun sequence {ECO:0000313|EMBL:KIO78053.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="
family 2 glycosyl transferase
qs_4_scaffold_738_25
CG_Ignavi_02, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(24034..25296)
DNA (1263bp) protein (421aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B4A715
hypothetical protein Tax=CG_Ignavi_02
hypothetical protein
qs_4_scaffold_738_26
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

25311..26612
DNA (1302bp) protein (434aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {EC
Phosphoribosylamine--glycine ligase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MIW9_RHOM4
qs_4_scaffold_738_27
Oscillatoriales cyanobacterium JSC-12, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

26769..30071
DNA (3303bp) protein (1101aa)
PAS domain S-box n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GGJ6_9CYAN
PAS domain S-box {ECO:0000313|EMBL:EKQ68033.1}; TaxID=864702 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales.;" source="Oscillatoriales cyanobacterium JSC-12.;"
PAS/PAC sensor hybrid histidine kinase
qs_4_scaffold_738_28
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30176..30559
DNA (384bp) protein (128aa)
FOG: CheY-like receiver n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SEF1_HAHCH
Putative two-component response regulator {ECO:0000313|EMBL:CDI01211.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="C
CheY-like receiver protein
qs_4_scaffold_738_29
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

30854..31780
DNA (927bp) protein (309aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJA6_RHOMR
cobyrinic acid ac-diamide synthase
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:AEN73484.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodot
Displaying items 1-30 of 50 in total

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