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QS_4_Halosimplex_carlsbadense_68_82

In projects: QS_4  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halosimplex carlsbadense  →  Halosimplex  →  Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Displaying items 1-50 of 137 in total
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contig # features sequence size GC content (%) Cov Coding Density (%) notes
qs_4_scaffold_1371
Species: Halosimplex carlsbadense (63.64%)
22 18293 bp 68.95 73.68 80.63
qs_4_scaffold_3210
Order: Halobacteriales (65.63%)
32 22518 bp 64.87 74.09 79.62
qs_4_scaffold_2678
Species: Halosimplex carlsbadense (70%)
10 7630 bp 68.99 74.25 86.38
qs_4_scaffold_1425
Species: Halosimplex carlsbadense (73.33%)
15 15957 bp 67.41 74.50 82.12
qs_4_scaffold_1852
Species: Halosimplex carlsbadense (50%)
12 9088 bp 67.09 74.61 87.97
qs_4_scaffold_2892
Order: Halobacteriales (71.43%)
14 13047 bp 69.82 74.70 89.63
qs_4_scaffold_6828
Order: Halobacteriales (66.67%)
9 10838 bp 68.81 75.20 72.97
qs_4_scaffold_4777
Species: Halosimplex carlsbadense (66.67%)
3 3591 bp 70.23 75.26 80.28
qs_4_scaffold_1254
Order: Halobacteriales (61.54%)
13 11746 bp 68.62 75.66 85.92
qs_4_scaffold_1902
Species: Halosimplex carlsbadense (63.64%)
11 7991 bp 70.94 76.07 86.38
qs_4_scaffold_2919
Order: Halobacteriales (77.78%)
9 6659 bp 66.26 76.14 75.10
qs_4_scaffold_1782
Species: Haloarcula californiae (71.43%)
7 8453 bp 67.09 76.62 91.00
qs_4_scaffold_1838
Species: Halosimplex carlsbadense (72.73%)
11 9189 bp 71.43 76.96 88.28
qs_4_scaffold_855
Order: Halobacteriales (76.47%)
51 56301 bp 67.51 77.58 90.05
qs_4_scaffold_2126
Species: Halosimplex carlsbadense (60%)
10 10117 bp 65.53 77.65 81.28
qs_4_scaffold_1869
Species: Halosimplex carlsbadense (81.48%)
27 21268 bp 69.47 77.67 84.83
qs_4_scaffold_1625
Species: Halosimplex carlsbadense (50%)
14 18293 bp 65.58 77.69 88.19
qs_4_scaffold_1773
Order: Halobacteriales (75%)
12 11586 bp 67.25 77.73 97.00
qs_4_scaffold_2829
Order: Halobacteriales (58.82%)
17 13674 bp 65.56 78.08 78.04
qs_4_scaffold_1392
Species: Halosimplex carlsbadense (62.5%)
16 18207 bp 69.22 78.15 78.66
qs_4_scaffold_3569
Species: Halosimplex carlsbadense (55.56%)
9 6851 bp 68.81 78.30 83.46
qs_4_scaffold_2543
Species: Halosimplex carlsbadense (72.73%)
11 12518 bp 67.34 78.38 74.56
qs_4_scaffold_2101
Order: Halobacteriales (55.56%)
18 16704 bp 65.84 78.39 85.96
qs_4_scaffold_1987
Species: Halosimplex carlsbadense (63.64%)
11 10332 bp 64.57 78.53 71.20
qs_4_scaffold_2050
Species: Halosimplex carlsbadense (52%)
25 20039 bp 68.69 78.60 81.64
qs_4_scaffold_2121
Order: Halobacteriales (80%)
10 8617 bp 67.96 78.60 78.37
qs_4_scaffold_1731
Species: Halosimplex carlsbadense (50%)
14 13097 bp 70.28 78.83 89.68
qs_4_scaffold_743
Order: Halobacteriales (67.92%)
53 54117 bp 68.66 78.90 88.75
qs_4_scaffold_2067
Species: Halosimplex carlsbadense (59.09%)
22 22600 bp 67.65 79.00 80.14
qs_4_scaffold_1133
Species: Halosimplex carlsbadense (60.61%)
33 31780 bp 67.64 79.03 79.26
qs_4_scaffold_2526
Species: Halosimplex carlsbadense (57.14%)
7 10252 bp 65.87 79.21 73.77
qs_4_scaffold_1947
Species: Halosimplex carlsbadense (55.56%)
9 10507 bp 66.40 79.22 85.63
qs_4_scaffold_4657
Species: Halosimplex carlsbadense (50%)
6 4852 bp 68.47 79.37 88.79
qs_4_scaffold_2301
Species: Halosimplex carlsbadense (70%)
10 9981 bp 67.74 79.58 77.01
qs_4_scaffold_2294
Species: Halosimplex carlsbadense (60%)
10 12002 bp 70.49 79.60 85.16
qs_4_scaffold_570
Species: Halosimplex carlsbadense (50%)
74 75303 bp 67.27 79.61 85.54
qs_4_scaffold_1606
Order: Halobacteriales (79.31%)
29 29456 bp 70.03 79.66 90.06
qs_4_scaffold_4387
Species: Halosimplex carlsbadense (71.43%)
7 5621 bp 66.54 79.72 79.74
qs_4_scaffold_4543
Species: Halosimplex carlsbadense (100%)
2 4190 bp 70.38 79.76 83.34
qs_4_scaffold_3113
Species: Halosimplex carlsbadense (80%)
5 5048 bp 68.05 79.83 79.16
qs_4_scaffold_889
Species: Halosimplex carlsbadense (65%)
20 18398 bp 67.71 79.97 81.68
qs_4_scaffold_7272
Species: Halosimplex carlsbadense (50%)
6 6304 bp 66.45 80.00 84.42
qs_4_scaffold_3195
Species: Halosimplex carlsbadense (85.71%)
7 11167 bp 64.70 80.14 70.25
qs_4_scaffold_676
Species: Halosimplex carlsbadense (63.33%)
30 33028 bp 68.79 80.28 83.05
qs_4_scaffold_4138
Species: Halosimplex carlsbadense (50%)
4 4018 bp 69.36 80.29 94.52
qs_4_scaffold_1199
Species: Halosimplex carlsbadense (64.71%)
17 19105 bp 69.17 80.36 77.60
qs_4_scaffold_1006
Species: Halosimplex carlsbadense (50%)
26 24602 bp 67.46 80.41 79.77
qs_4_scaffold_2499
Species: Halosimplex carlsbadense (100%)
6 6150 bp 69.20 80.46 89.12
qs_4_scaffold_1435
Species: Halosimplex carlsbadense (73.33%)
15 15133 bp 68.43 80.52 79.59
qs_4_scaffold_372
Species: Halosimplex carlsbadense (59.14%)
93 95080 bp 67.83 80.60 81.29
Displaying items 1-50 of 137 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.