ggKbase home page
Advanced Search
Search Help

QS_9_Eukaryota_52_13

QS_9_unknown_55_15
In projects: QS_9

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_9_UNK

Properties

Avg. coverage: 15.48 Longest contig: 230.46 Kbp Bin length: 11.28 Mbp GC content: 55.38 %
Contigs count: 327 Features count: 11017 rRNAs count: 2 tRNAs count: 44

Genome completeness

megabin RP 48 / 55 MC: 29 BSCG 44 / 51 MC: 24 ASCG 24 / 38 MC: 9
Displaying items 201-250 of 327 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_9_scaffold_109 78 83662 bp 55.98 14.43 82.14
qs_9_scaffold_1963 21 12665 bp 55.72 14.42 81.48
qs_9_scaffold_256 42 42684 bp 55.02 14.42 75.45
qs_9_scaffold_1062 11 9924 bp 54.63 14.42 79.38
qs_9_scaffold_65 58 54505 bp 55.41 14.40 80.99
qs_9_scaffold_12 122 157784 bp 56.19 14.40 80.94
qs_9_scaffold_721 20 15217 bp 55.19 14.40 75.88
qs_9_scaffold_14 91 88379 bp 55.70 14.39 79.50
qs_9_scaffold_257 36 45506 bp 55.69 14.39 74.67
qs_9_scaffold_2935 6 5147 bp 51.78 14.38 65.69
qs_9_scaffold_417 23 30043 bp 56.26 14.38 73.86
qs_9_scaffold_207
Domain: Viridiplantae (50%)
14 24384 bp 54.42 14.38 77.28
qs_9_scaffold_261 14 21856 bp 56.19 14.38 66.96
qs_9_scaffold_73 49 41836 bp 56.27 14.37 79.33
qs_9_scaffold_92 55 59543 bp 56.64 14.37 74.47
qs_9_scaffold_49 57 48147 bp 55.78 14.37 82.20
qs_9_scaffold_70 113 121391 bp 55.17 14.36 76.79
qs_9_scaffold_149 28 30273 bp 55.72 14.36 81.64
qs_9_scaffold_227 29 30969 bp 54.80 14.36 73.13
qs_9_scaffold_95 99 123148 bp 56.15 14.36 82.21
qs_9_scaffold_2337
Domain: Viridiplantae (57.14%)
7 5967 bp 55.82 14.36 78.73
qs_9_scaffold_77 62 64445 bp 56.15 14.35 78.89
qs_9_scaffold_632 18 19161 bp 55.11 14.35 75.32
qs_9_scaffold_38 104 97366 bp 56.53 14.35 77.08
qs_9_scaffold_1676 12 12542 bp 51.99 14.34 65.42
qs_9_scaffold_434 19 17761 bp 56.46 14.33 76.03
qs_9_scaffold_339 41 43480 bp 56.13 14.32 75.96
qs_9_scaffold_3403 2 5376 bp 49.20 14.32 93.47
qs_9_scaffold_359 32 36545 bp 55.85 14.31 78.54
qs_9_scaffold_82 42 41501 bp 55.70 14.31 76.85
qs_9_scaffold_271 36 38491 bp 55.82 14.31 74.63
qs_9_scaffold_197 27 25542 bp 58.02 14.30 85.81
qs_9_scaffold_156
Domain: Viridiplantae (50%)
28 29606 bp 55.89 14.30 75.85
qs_9_scaffold_13 144 144394 bp 54.84 14.29 78.97
qs_9_scaffold_414 29 17556 bp 54.44 14.29 81.85
qs_9_scaffold_352 69 65427 bp 61.92 14.28 85.47
qs_9_scaffold_46 77 62706 bp 55.51 14.27 75.67
qs_9_scaffold_336 32 43317 bp 56.47 14.25 77.87
qs_9_scaffold_44 208 201615 bp 55.05 14.25 77.75
qs_9_scaffold_103
Domain: Viridiplantae (51.85%)
54 52694 bp 55.54 14.24 73.32
qs_9_scaffold_599 8 13820 bp 55.12 14.24 64.23
qs_9_scaffold_3267 5 4803 bp 61.88 14.24 78.01
qs_9_scaffold_1186 11 9266 bp 55.44 14.23 80.71
qs_9_scaffold_1022 7 10160 bp 55.39 14.22 77.48
qs_9_scaffold_291 24 21716 bp 53.86 14.22 60.73
qs_9_scaffold_191
Domain: Viridiplantae (50%)
20 26004 bp 55.08 14.18 70.87
qs_9_scaffold_226 20 28048 bp 61.12 14.17 71.82
qs_9_scaffold_21 68 66099 bp 56.07 14.14 72.95
qs_9_scaffold_634 28 24048 bp 55.67 14.13 73.29
qs_9_scaffold_776
Domain: Viridiplantae (50%)
12 11891 bp 56.84 14.13 83.71
Displaying items 201-250 of 327 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.