ggKbase home page

RBG_13_DPX1_53_10_RBG_13_scaffold_6020

Search features with annotation key words

Displaying 27 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_1
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1075)
DNA (1074bp) protein (358aa)
ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] Tax=RBG_13_Deltaproteobacteria_53_10_curated
ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M1X0_GEODF
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_2
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1059..1547)
DNA (489bp) protein (163aa)
rfaE bifunctional protein; K03272 D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] Tax=RBG_13_Deltaproteobacteria_53_10_curated
Glycerol-3-phosphate cytidyltransferase id=4865804 bin=GWC2_Nitrospirae_57_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
rfaE bifunctional protein
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_3
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1652..2260
DNA (609bp) protein (203aa)
maf protein; K06287 septum formation protein Tax=RBG_13_Deltaproteobacteria_53_10_curated
Maf-like protein SYNAS_11200 id=4806771 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
maf protein
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_4
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2387..3067
DNA (681bp) protein (227aa)
alanine racemase; K06997 Tax=RBG_13_Deltaproteobacteria_53_10_curated
Alanine racemase domain protein id=4736520 bin=GWC2_Nitrospirae_57_13 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
alanine racemase
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_5
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3134..4159
DNA (1026bp) protein (342aa)
Fibronectin type III domain protein n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NDN1_DESAR
fibronectin type III Tax=RBG_13_Deltaproteobacteria_53_10_curated
fibronectin type III
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_6
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4321..4527)
DNA (207bp) protein (69aa)
Tax=RBG_13_Deltaproteobacteria_53_10_curated
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_7
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5053..5631
DNA (579bp) protein (193aa)
diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=RBG_13_Deltaproteobacteria_53_10_curated
diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NDN2_DESAR
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_8
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5838..6662
DNA (825bp) protein (275aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] Tax=RBG_13_Deltaproteobacteria_53_10_curated
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LYC5_SYNAS
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_9
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6659..7504
DNA (846bp) protein (282aa)
dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] Tax=RBG_13_Deltaproteobacteria_53_10_curated
dihydrodipicolinate reductase (EC:1.3.1.26)
Dihydrodipicolinate reductase id=3900889 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_10
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7511..8275
DNA (765bp) protein (255aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10) Tax=RBG_13_Deltaproteobacteria_53_10_curated
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
Ureidoglycolate lyase id=2964643 bin=GWC2_Nitrospirae_57_13 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_11
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8509..9405
DNA (897bp) protein (299aa)
Extracellular ligand-binding receptor n=1 Tax=alpha proteobacterium BAL199 RepID=A8TN35_9PROT
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RBG_13_Deltaproteobacteria_53_10_curated
extracellular ligand-binding receptor
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_12
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9553..10389
DNA (837bp) protein (279aa)
inner-membrane translocator Tax=RBG_13_Deltaproteobacteria_53_10_curated
Inner-membrane translocator id=1793829 bin=GWD2_Chloroflexi_49_16 species=unknown genus=Acidiphilium taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
inner-membrane translocator
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_13
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10402..11355
DNA (954bp) protein (318aa)
high-affinity branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein Tax=RBG_13_Deltaproteobacteria_53_10_curated
Putative high-affinity branched-chain amino acid ABC transporter, permease protein id=2920415 bin=GWC2_Chloroflexi_49_37 species=Paenibacillus terrae genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
high-affinity branched-chain amino acid ABC transporter permease
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_14
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11297..12148
DNA (852bp) protein (284aa)
sulfate-transporting ATPase (EC:3.6.3.25); K01995 branched-chain amino acid transport system ATP-binding protein Tax=RBG_13_Deltaproteobacteria_53_10_curated
sulfate-transporting ATPase (EC:3.6.3.25)
Phosphonate-transporting ATPase id=2177751 bin=GWB2_Clostridiales_37_7 species=Tepidanaerobacter acetatoxydans genus=Tepidanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_15
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12135..12842
DNA (708bp) protein (236aa)
branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RBG_13_Deltaproteobacteria_53_10_curated
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family id=1793835 bin=GWD2_Chloroflexi_49_16 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
branched-chain amino acid ABC transporter ATP-binding protein
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_16
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12954..13487)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K3D6_DEHLB
hypothetical protein Tax=RBG_13_Deltaproteobacteria_53_10_curated
hypothetical protein
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_17
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14048..14890
DNA (843bp) protein (281aa)
3-keto-5-aminohexanoate cleavage enzyme n=1 Tax=Clostridium ultunense Esp RepID=M1ZA29_9CLOT
hypothetical protein Tax=RBG_13_Deltaproteobacteria_53_10_curated
hypothetical protein
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_18
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15249..15614)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YEP1_9BACT
hypothetical protein Tax=RBG_13_Deltaproteobacteria_53_10_curated
hypothetical protein
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_19
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15641..16525)
DNA (885bp) protein (295aa)
2-hydroxy-3-oxopropionate reductase; K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] Tax=RBG_13_Deltaproteobacteria_53_10_curated
garR; 2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
Predicted hydroxyacid dehydrogenase/reductase id=4160328 bin=GWC2_Syntrophus__56_31 species=Clostridium ljungdahlii genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_20
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16967..17134)
DNA (168bp) protein (56aa)
Tax=RBG_13_Deltaproteobacteria_53_10_curated
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_21
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17286..17849
DNA (564bp) protein (188aa)
glutamate-1-semialdehyde-2,1-aminomutase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RBG_13_Deltaproteobacteria_53_10_curated
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4R7_SPHTD
glutamate-1-semialdehyde-2,1-aminomutase
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_22
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18133..19233
DNA (1101bp) protein (367aa)
ketol-acid reductoisomerase (EC:1.1.1.86); K00053 ketol-acid reductoisomerase [EC:1.1.1.86] Tax=RBG_13_Deltaproteobacteria_53_10_curated
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZV88_OPITP
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_23
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19459..20607
DNA (1149bp) protein (383aa)
Quinolone resistence protein, major facilitator family transporter n=11 Tax=Bacillus cereus group RepID=C3DFN1_BACTS
major facilitator family transporter Tax=RBG_13_Deltaproteobacteria_53_10_curated
major facilitator family transporter
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_24
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20694..21728)
DNA (1035bp) protein (345aa)
D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RBG_13_Deltaproteobacteria_53_10_curated
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-ala D-ala ligase domain protein id=3061115 bin=GWC2_Syntrophobacterales_56_13 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_25
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22566..22997)
DNA (432bp) protein (144aa)
hypothetical protein
Marine sediment metagenome DNA, contig: S01H1_L05170 Tax=RBG_13_Deltaproteobacteria_53_10_curated
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_26
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23340..23597
DNA (258bp) protein (86aa)
Tax=RBG_13_Deltaproteobacteria_53_10_curated
RBG_13_DPX1_53_10_RBG_13_scaffold_6020_27
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23802..24377
DNA (576bp) protein (192aa)
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LLP9_SYNFM
hypothetical protein Tax=RBG_13_Deltaproteobacteria_53_10_curated
hypothetical protein
Displaying 27 items

View Taxonomy