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RBG_13_scaffold_1348_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_13_scaffold_1348_curated_1
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

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comp(38..283)
DNA (246bp) protein (82aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_2
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

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comp(321..653)
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Mycobacterium abscessus RepID=H0IVH2_MYCAB
hypothetical protein
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_3
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(662..1663)
DNA (1002bp) protein (334aa)
tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] rbh
Tryptophan--tRNA ligase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NL68_ROSCS rbh
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_4
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

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1902..2585
DNA (684bp) protein (228aa)
ctc; 50S ribosomal protein L25/general stress protein Ctc; K02897 large subunit ribosomal protein L25 id=51523 bin=ACD40 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=ACD40 organism_group=OP11 (Microgenomates) organism_desc=OP11
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; K02897 large subunit ribosomal protein L25
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_5
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

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comp(2582..3022)
DNA (441bp) protein (147aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_6
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

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3053..4084
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2E953_9BACT
SUA5; translation factor (SUA5); K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_7
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

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comp(4318..4926)
DNA (609bp) protein (203aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_8
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

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4952..5983
DNA (1032bp) protein (344aa)
gcp; DNA-binding/iron metalloprotein/AP endonuclease; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57]
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp id=3063823 bin=GWF2_CPR3_35_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=GWF2_CPR3_35_18 organism_group=CPR3 rbh
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_9
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

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comp(5972..6655)
DNA (684bp) protein (228aa)
seg id=5803658 bin=OD1_GWC2_34_28 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_10
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

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comp(6662..8368)
DNA (1707bp) protein (569aa)
hypothetical protein n=1 Tax=candidate division OP11 bacterium SCGC AAA011-J08 RepID=UPI000374DC25 rbh
VanW family protein
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_11
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

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comp(8365..8781)
DNA (417bp) protein (139aa)
ribonuclease H; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
hypothetical protein n=1 Tax=candidate division OP11 bacterium SCGC AAA011-J08 RepID=UPI00037BB7C6
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_12
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(8831..9067)
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Pseudomonas pelagia RepID=UPI00039B3E1F
hypothetical protein
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_13
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

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comp(9097..9663)
DNA (567bp) protein (189aa)
Putative uncharacterized protein id=3937994 bin=GWA2_OP3_53_43 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
putative divalent heavy-metal cation transporter
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_14
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

9709..11229
DNA (1521bp) protein (507aa)
hypothetical protein n=1 Tax=candidate division OP11 bacterium SCGC AAA011-J08 RepID=UPI00036EE451 rbh
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_15
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

11229..11843
DNA (615bp) protein (205aa)
triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
hypothetical protein, partial n=1 Tax=candidate division OP11 bacterium SCGC AAA011-J08 RepID=UPI00035FE2CC
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_16
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

11856..12536
DNA (681bp) protein (227aa)
band 7 protein id=15191711 bin=GWC1_OP11_49_16_COMPLETE species=RAAC19 genus=RAAC19 taxon_order=RAAC19 taxon_class=RAAC19 phylum=OP11 tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
hypothetical protein
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_17
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(12496..13068)
DNA (573bp) protein (191aa)
Phosphoribosyl transferase domain protein id=2607525 bin=GWC1_OD1_38_17 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_18
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

13107..13982
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Rhodococcus erythropolis CCM2595 RepID=T1VTH0_RHOER
hypothetical protein
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_19
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(14469..14951)
DNA (483bp) protein (161aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_20
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(15066..15620)
DNA (555bp) protein (185aa)
DUF3467 id=74839 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_21
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

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comp(15685..16098)
DNA (414bp) protein (138aa)
single-stranded DNA-binding protein n=1 Tax=Brevibacillus sp. phR RepID=UPI00031AA230
SsrA-binding protein; K03664 SsrA-binding protein
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_22
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(16106..17797)
DNA (1692bp) protein (564aa)
Uncharacterized protein id=5097630 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_23
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(18035..18457)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2E9Z7_9BACT
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_24
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(18781..19284)
DNA (504bp) protein (168aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_25
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(19281..20969)
DNA (1689bp) protein (563aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DXE9_9BACT rbh
SpoIID/LytB domain-containing protein
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_26
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

21002..21412
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AG76_9BACT
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_27
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

21412..21939
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F3V4_9BACT
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_28
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

21936..22145
DNA (210bp) protein (70aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1348_curated_29
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

22147..22419
DNA (273bp) protein (91aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
Displaying 29 items

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