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RBG_13_OP3_44_8_RBG_13_scaffold_2041

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_13_OP3_44_8_RBG_13_scaffold_2041_1
unknown

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3..683
DNA (681bp) protein (227aa)
ABC-2 type transporter id=4572072 bin=GWF2_OP3_43_52 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
ABC-2 type transporter; K09690 lipopolysaccharide transport system permease protein
RBG_13_OP3_44_8_RBG_13_scaffold_2041_2
unknown

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686..1423
DNA (738bp) protein (246aa)
ABC transporter related protein id=4572073 bin=GWF2_OP3_43_52 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
ABC transporter-like protein; K09691 lipopolysaccharide transport system ATP-binding protein
RBG_13_OP3_44_8_RBG_13_scaffold_2041_3
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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1420..3306
DNA (1887bp) protein (629aa)
Glycosyl transferase family 2 n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RDR5_ARCPA
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADB58259.1}; TaxID=572546 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 /; Av18).;"
RBG_13_OP3_44_8_RBG_13_scaffold_2041_4
unknown

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3303..4625
DNA (1323bp) protein (441aa)
hypothetical protein id=24442349 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
RBG_13_OP3_44_8_RBG_13_scaffold_2041_5

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4629..5993
DNA (1365bp) protein (455aa)
ExoQ family exopolysaccharide biosynthesis membrane protein n=1 Tax=uncultured bacterium RepID=K1ZPW6_9BACT
ExoQ family exopolysaccharide biosynthesis membrane protein {ECO:0000313|EMBL:EKD46333.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
O-antigen polymerase
RBG_13_OP3_44_8_RBG_13_scaffold_2041_6
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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5978..7123
DNA (1146bp) protein (382aa)
Glycosyl transferase group 1 n=1 Tax=Thermincola potens (strain JR) RepID=D5XCZ9_THEPJ
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ADG83675.1}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
RBG_13_OP3_44_8_RBG_13_scaffold_2041_7
unknown

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7107..8294
DNA (1188bp) protein (396aa)
group 1 glycosyl transferase; K12995 rhamnosyltransferase [EC:2.4.1.-]
Glycosyl transferase group 1 id=4572076 bin=GWF2_OP3_43_52 species=Halanaerobium praevalens genus=Halanaerobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RBG_13_OP3_44_8_RBG_13_scaffold_2041_8
unknown

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8368..10296
DNA (1929bp) protein (643aa)
Capsular exopolysaccharide family id=4185472 bin=GWC2_OP3_44_8 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
capsular polysaccharide biosynthesis protein
RBG_13_OP3_44_8_RBG_13_scaffold_2041_9
unknown

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10305..11108
DNA (804bp) protein (268aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_2041_10
unknown

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11131..12591
DNA (1461bp) protein (487aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI00037AA1DE
RBG_13_OP3_44_8_RBG_13_scaffold_2041_11

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12588..13850
DNA (1263bp) protein (421aa)
hypothetical protein n=1 Tax=Calothrix sp. PCC 7103 RepID=UPI00036D2072
Marine sediment metagenome DNA, contig: S01H1_L01977 {ECO:0000313|EMBL:GAF68576.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
RBG_13_OP3_44_8_RBG_13_scaffold_2041_12
unknown

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comp(13847..14059)
DNA (213bp) protein (71aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_2041_13
unknown

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comp(14249..14575)
DNA (327bp) protein (109aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_2041_14
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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15154..15609
DNA (456bp) protein (152aa)
Methyltransferase, FkbM family n=1 Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2EKI1_9ARCH
Methyltransferase, FkbM family {ECO:0000313|EMBL:EPA05162.1}; TaxID=859192 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia BG20.;"
FkbM family methyltransferase
RBG_13_OP3_44_8_RBG_13_scaffold_2041_15
Synechococcus sp. PCC 7002, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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15966..16376
DNA (411bp) protein (137aa)
Polysaccharide biosynthesis export protein n=1 Tax=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) RepID=B1XK74_SYNP2
polysaccharide biosynthesis export protein
Polysaccharide biosynthesis export protein {ECO:0000313|EMBL:ACB00429.1}; TaxID=32049 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum; quadruplicatum).;"
Displaying 15 items

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