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RBG_13_OP3_44_8_RBG_13_scaffold_14516

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_13_OP3_44_8_RBG_13_scaffold_14516_1
unknown

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comp(2..1057)
DNA (1056bp) protein (352aa)
Flavoprotein, HI0933 family id=3071730 bin=GWF2_OP3_38_59 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
flavoprotein; K07007
RBG_13_OP3_44_8_RBG_13_scaffold_14516_2
unknown

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comp(1067..1303)
DNA (237bp) protein (79aa)
Orotate phosphoribosyltransferase id=4207116 bin=GWF2_OP3_38_59 species=Methanosaeta concilii genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
orotate phosphoribosyltransferase
RBG_13_OP3_44_8_RBG_13_scaffold_14516_3
unknown

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1693..2163
DNA (471bp) protein (157aa)
Phosphoribosyltransferase id=2088343 bin=GWB2_CP_45_9 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RBG_13_OP3_44_8_RBG_13_scaffold_14516_4
unknown

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2184..2327
DNA (144bp) protein (48aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_14516_5
unknown

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2330..3436
DNA (1107bp) protein (369aa)
Permease id=2088340 bin=GWB2_CP_45_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
permease
RBG_13_OP3_44_8_RBG_13_scaffold_14516_6
unknown

Not on your lists

3424..4524
DNA (1101bp) protein (367aa)
Permease YjgP/YjgQ family protein id=4801962 bin=GWC2_OP3_44_8 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
permease
RBG_13_OP3_44_8_RBG_13_scaffold_14516_7

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comp(4521..4709)
DNA (189bp) protein (63aa)
alr; alanine racemase Alr (EC:5.1.1.1)
Alanine racemase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VMM1_CLOSH
Marine sediment metagenome DNA, contig: S06H3_C04040 {ECO:0000313|EMBL:GAI14799.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
RBG_13_OP3_44_8_RBG_13_scaffold_14516_8
unknown

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comp(6300..6770)
DNA (471bp) protein (157aa)
Predicted ATPase or kinase id=2256068 bin=GWA2_OP3_53_43 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein; K06925 UPF0079 ATP-binding protein
RBG_13_OP3_44_8_RBG_13_scaffold_14516_9
unknown

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comp(6780..7673)
DNA (894bp) protein (298aa)
thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16]
Thiamine-monophosphate kinase id=4012284 bin=GWF2_OP3_43_52 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RBG_13_OP3_44_8_RBG_13_scaffold_14516_10
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7660..7839)
DNA (180bp) protein (60aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
mtnA; methylthioribose-1-phosphate isomerase MtnA; K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
Methylthioribose-1-phosphate isomerase n=1 Tax=Clostridium sp. CAG:217 RepID=R6J1S6_9CLOT
Displaying 10 items

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