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RBG_16_DPX1_47_11_RBG_16_scaffold_11911

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_1
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

539..1546
DNA (1008bp) protein (336aa)
Tyrosine recombinase XerC n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8N8_GEOUR
xerC; site-specific recombinase; K03733 integrase/recombinase XerC Tax=RBG_16_Deltaproteobacteria_47_11_curated
tyrosine recombinase XerC
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_2
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1488..1667
DNA (180bp) protein (60aa)
Tax=RBG_16_Deltaproteobacteria_47_11_curated
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_3
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1751..2287
DNA (537bp) protein (179aa)
ATP-dependent protease peptidase subunit (EC:3.4.25.1); K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] Tax=RBG_16_Deltaproteobacteria_47_11_curated
ATP-dependent protease peptidase subunit (EC:3.4.25.1)
ATP-dependent protease subunit HslV n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LT91_SYNAS
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_4
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2287..3615
DNA (1329bp) protein (443aa)
hslU; ATP-dependent protease ATP-binding subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU Tax=RBG_16_Deltaproteobacteria_47_11_curated
ATP-dependent protease ATPase subunit HslU id=3545369 bin=GWC2_Deltaproteobacteria_42_51 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hslU; ATP-dependent protease ATP-binding subunit HslU
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_5
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3734..4624
DNA (891bp) protein (297aa)
acetylglutamate kinase (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8] Tax=RBG_16_Deltaproteobacteria_47_11_curated
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase id=4882672 bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_6
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4745..5962
DNA (1218bp) protein (406aa)
acetylornithine aminotransferase (EC:2.6.1.11); K00818 acetylornithine aminotransferase [EC:2.6.1.11] Tax=RBG_16_Deltaproteobacteria_47_11_curated
Acetylornithine aminotransferase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RG65_MOOTA
acetylornithine aminotransferase
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_7
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6114..7319
DNA (1206bp) protein (402aa)
argG; Argininosuccinate synthase (Citrulline--aspartate ligase) (EC:6.3.4.5) Tax=RBG_16_Deltaproteobacteria_47_11_curated
argG; Argininosuccinate synthase (Citrulline--aspartate ligase) (EC:6.3.4.5)
Argininosuccinate synthase id=3467337 bin=GWC2_Proteo_65_14_Ab886 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_8
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7427..10024
DNA (2598bp) protein (866aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RBG_16_Deltaproteobacteria_47_11_curated
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXG3_DESAC
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_9
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10036..10776
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI00037EFCB3
hypothetical protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
hypothetical protein
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_10
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10968..11531
DNA (564bp) protein (188aa)
Elongation factor P n=2 Tax=Geobacter metallireducens RepID=Q39UK7_GEOMG
elongation factor P; K02356 elongation factor P Tax=RBG_16_Deltaproteobacteria_47_11_curated
efp-2; elongation factor P
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_11
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11536..12459
DNA (924bp) protein (308aa)
tRNA synthetase; K04568 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=RBG_16_Deltaproteobacteria_47_11_curated
tRNA synthetase, class II (D, K and N) n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3G8_GEOUR
tRNA synthetase
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_12
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12493..12930)
DNA (438bp) protein (146aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
Putative uncharacterized protein id=4012462 bin=GWF2_OP3_43_52 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_13
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12890..13183)
DNA (294bp) protein (98aa)
id=4012461 Tax=RBG_16_Deltaproteobacteria_47_11_curated
id=4012461 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_14
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13222..14391
DNA (1170bp) protein (390aa)
N-6 adenine-specific DNA methylase; K07444 putative N6-adenine-specific DNA methylase [EC:2.1.1.-] Tax=RBG_16_Deltaproteobacteria_47_11_curated
Predicted N6-adenine-specific DNA methylase id=2170874 bin=GWB2_Nitrospirae_rel_47_37 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
N-6 adenine-specific DNA methylase
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_15
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14460..14723
DNA (264bp) protein (88aa)
Tax=RBG_16_Deltaproteobacteria_47_11_curated
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_16
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14734..15780
DNA (1047bp) protein (349aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=RBG_16_Deltaproteobacteria_47_11_curated
DNA polymerase III, delta subunit n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G675_GEOUR
DNA polymerase III subunit delta
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_17
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15926..16201)
DNA (276bp) protein (92aa)
30S ribosomal protein S20 n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=RS20_SYNAS
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RBG_16_Deltaproteobacteria_47_11_curated
30S ribosomal protein S20
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_18
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16335..17909
DNA (1575bp) protein (525aa)
Virulence factor protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LU54_SYNAS
virulence factor protein; K03980 virulence factor Tax=RBG_16_Deltaproteobacteria_47_11_curated
virulence factor protein
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_19
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17969..19123
DNA (1155bp) protein (385aa)
FAD dependent oxidoreductase; K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1] Tax=RBG_16_Deltaproteobacteria_47_11_curated
FAD dependent oxidoreductase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2R8_SPHTD
FAD dependent oxidoreductase
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_20
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19393..20178
DNA (786bp) protein (262aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8EWA7_9DELT
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_21
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


20268..20459
DNA (192bp) protein (64aa)
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=RBG_16_Deltaproteobacteria_47_11_curated
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 id=1956237 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_22
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20531..22702)
DNA (2172bp) protein (724aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5] Tax=RBG_16_Deltaproteobacteria_47_11_curated
GTP/GDP 3'-pyrophosphokinase and (P)ppGpp 3'-pyrophosphohydrolase n=2 Tax=Geobacter sulfurreducens RepID=D7ALE0_GEOSK
relA; GTP/GDP 3'-pyrophosphokinase and (p)ppGpp 3'-pyrophosphohydrolase
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_23
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22940..23944
DNA (1005bp) protein (335aa)
Secretion protein n=1 Tax=planctomycete KSU-1 RepID=I3IR07_9PLAN
secretion protein HlyD family protein; K01993 HlyD family secretion protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
secretion protein HlyD family protein
RBG_16_DPX1_47_11_RBG_16_scaffold_11911_24
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23901..25118
DNA (1218bp) protein (406aa)
ABC transporter-like protein; K01990 ABC-2 type transport system ATP-binding protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
ABC transporter related protein id=4685176 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
ybhF-N2; ABC transporter ATP-binding protein
Displaying 24 items

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