ggKbase home page

RBG_16_DPX1_47_11_RBG_16_scaffold_2105

Search features with annotation key words

Displaying 25 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_1
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..142
DNA (141bp) protein (47aa)
PAS domain S-box n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C3H5_DESTA
PAS domain S-box Tax=RBG_16_Deltaproteobacteria_47_11_curated
PAS domain S-box
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_2
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

224..1822
DNA (1599bp) protein (533aa)
multi-sensor hybrid histidine kinase Tax=RBG_16_Deltaproteobacteria_47_11_curated
Putative uncharacterized protein id=4879841 bin=GWC2_Nitrospirae-rel_56_14 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
multi-sensor hybrid histidine kinase
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_3
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2244..4262
DNA (2019bp) protein (673aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1Y9P4_9DELT
putative PAS/PAC sensor protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
putative PAS/PAC sensor protein
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_4
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4333..4626
DNA (294bp) protein (98aa)
Two-component system signal transduction response regulator n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B2B1_CLOA9
two-component system signal transduction response regulator Tax=RBG_16_Deltaproteobacteria_47_11_curated
two-component system signal transduction response regulator
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_5
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4796..5464
DNA (669bp) protein (223aa)
response regulator Tax=RBG_16_Deltaproteobacteria_47_11_curated
Response regulator receiver modulated metal dependent phosphohydrolase id=3809927 bin=GWF2_Geobacter_54_21 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
response regulator
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_6
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5668..6069)
DNA (402bp) protein (134aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
Putative uncharacterized protein id=4332808 bin=GWA2_Deltaproteo_65_63 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
hypothetical protein
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_7
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6084..6503)
DNA (420bp) protein (140aa)
Tax=RBG_16_Deltaproteobacteria_47_11_curated
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_8
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6605..6784)
DNA (180bp) protein (60aa)
Tax=RBG_16_Deltaproteobacteria_47_11_curated
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_9
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6753..7619)
DNA (867bp) protein (289aa)
response regulator receiver modulated diguanylate cyclase Tax=RBG_16_Deltaproteobacteria_47_11_curated
Two-component sensor kinase id=4289386 bin=GWC2_CP_Nitrospirae-rel_42_7 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
response regulator receiver modulated diguanylate cyclase
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_10
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7718..7912)
DNA (195bp) protein (65aa)
Tax=RBG_16_Deltaproteobacteria_47_11_curated
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_11
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8815..9867
DNA (1053bp) protein (351aa)
Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I2H5_DESAP
response regulator receiver modulated metal dependent phosphohydrolase Tax=RBG_16_Deltaproteobacteria_47_11_curated
response regulator receiver modulated metal dependent phosphohydrolase
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_12
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9875..10654
DNA (780bp) protein (260aa)
Putative R-phenyllactate dehydratase activator n=1 Tax=delta proteobacterium NaphS2 RepID=D8FEV8_9DELT
hadI; activator of 2-hydroxyisocaproyl-CoA dehydratase Tax=RBG_16_Deltaproteobacteria_47_11_curated
activator of 2-hydroxyisocaproyl-CoA dehydratase
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_13
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10719..11879
DNA (1161bp) protein (387aa)
2-hydroxyglutaryl-CoA dehydratase, D-component n=1 Tax=delta proteobacterium NaphS2 RepID=D8FEV7_9DELT
Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB Tax=RBG_16_Deltaproteobacteria_47_11_curated
Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_14
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12094..13497
DNA (1404bp) protein (468aa)
2-hydroxyglutaryl-CoA dehydratase, D-component n=1 Tax=delta proteobacterium NaphS2 RepID=D8FEV6_9DELT
2-hydroxyglutaryl-CoA dehydratase subunit D Tax=RBG_16_Deltaproteobacteria_47_11_curated
2-hydroxyglutaryl-CoA dehydratase subunit D
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_15
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13685..14554
DNA (870bp) protein (290aa)
Putative benzoyl-CoA reductase, subunit D n=1 Tax=delta proteobacterium NaphS2 RepID=D8FEV5_9DELT
CoA-substrate-specific enzyme activase Tax=RBG_16_Deltaproteobacteria_47_11_curated
CoA-substrate-specific enzyme activase
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_16
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14661..15032
DNA (372bp) protein (124aa)
cytochrome c, class III, conserved region Tax=RBG_16_Deltaproteobacteria_47_11_curated
id=14624678 bin=bin5_DeltaP tax=bin5_DeltaP organism_group=Deltaproteobacteria
cytochrome c, class III, conserved region
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_17
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15226..16725
DNA (1500bp) protein (500aa)
ResB-like n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JX86_DESAC
ResB-like protein; K07399 cytochrome c biogenesis protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
cytochrome C biogenesis protein ResB
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_18
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16868..17152
DNA (285bp) protein (95aa)
DNA-binding protein HU n=2 Tax=Bdellovibrio bacteriovorus RepID=K7YUQ1_BDEBC
DNA-binding protein HU Tax=RBG_16_Deltaproteobacteria_47_11_curated
DNA-binding protein HU
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_19
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17202..18263)
DNA (1062bp) protein (354aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YIH8_9DELT
histone deacetylase family protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
histone deacetylase family protein
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_20
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18645..19190
DNA (546bp) protein (182aa)
Tax=RBG_16_Deltaproteobacteria_47_11_curated
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_21
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19918..20904
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=unclassified candidate division EM 19 RepID=UPI00037E4BE9
TGS domain-containing protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
TGS domain-containing protein
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_22
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21197..21964
DNA (768bp) protein (256aa)
id=4282408 Tax=RBG_16_Deltaproteobacteria_47_11_curated
id=4282408 bin=GWC2_Deltaproteobacteria_42_51 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_23
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22068..22613)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PHK7_9BACT
hypothetical protein; K09928 hypothetical protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
hypothetical protein
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_24
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22646..23377)
DNA (732bp) protein (244aa)
putative DNA glycosylase (EC:3.2.2.-); K10773 endonuclease III [EC:4.2.99.18] Tax=RBG_16_Deltaproteobacteria_47_11_curated
putative DNA glycosylase (EC:3.2.2.-)
Endonuclease III n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MYA6_ANATU
RBG_16_DPX1_47_11_RBG_16_scaffold_2105_25
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23343..23444)
DNA (102bp) protein (34aa)
Tax=RBG_16_Deltaproteobacteria_47_11_curated
Displaying 25 items

View Taxonomy