ggKbase home page

RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576

Search features with annotation key words

Displaying items 1-30 of 35 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_1
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..91)
DNA (90bp) protein (30aa)
Tax=RBG_16_Gammaproteobacteria_62_13__curated
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_2
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

272..748
DNA (477bp) protein (159aa)
Tax=RBG_16_Gammaproteobacteria_62_13__curated
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_3
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1281..2063)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4KR95_9GAMM
ABC transporter permease; K09694 lipooligosaccharide transport system permease protein Tax=RBG_16_Gammaproteobacteria_62_13__curated
ABC transporter permease
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_4
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2333..2965
DNA (633bp) protein (211aa)
phenol hydroxylase n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A2F80
phenol hydroxylase Tax=RBG_16_Gammaproteobacteria_62_13__curated
phenol hydroxylase
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_5
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3424..4293)
DNA (870bp) protein (290aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10) Tax=RBG_16_Gammaproteobacteria_62_13__curated
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BTD6_9GAMM
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_6
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4476..5042
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00035C8B07
cell wall hydrolase SleB Tax=RBG_16_Gammaproteobacteria_62_13__curated
cell wall hydrolase SleB
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_7
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5222..5800
DNA (579bp) protein (193aa)
hypothetical protein Tax=RBG_16_Gammaproteobacteria_62_13__curated
Putative uncharacterized protein id=1372250 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_8
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5948..7030)
DNA (1083bp) protein (361aa)
Diguanylate cyclase n=1 Tax=Geobacter sp. (strain M18) RepID=E8WNC8_GEOS8
diguanylate cyclase Tax=RBG_16_Gammaproteobacteria_62_13__curated
diguanylate cyclase
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_9
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7271..7420)
DNA (150bp) protein (50aa)
Tax=RBG_16_Gammaproteobacteria_62_13__curated
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_10
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7389..8552)
DNA (1164bp) protein (388aa)
NADH:flavin oxidoreductase/NADH oxidase Tax=RBG_16_Gammaproteobacteria_62_13__curated
NADH:flavin oxidoreductase/NADH oxidase id=2070066 bin=GWE2_Gallionellales_58_10 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
NADH:flavin oxidoreductase/NADH oxidase
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_11
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8656..9057)
DNA (402bp) protein (134aa)
DoxX family protein n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9XGZ4_9CHRO
DoxX family protein Tax=RBG_16_Gammaproteobacteria_62_13__curated
DoxX family protein
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_12
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9172..9876)
DNA (705bp) protein (235aa)
Putative uncharacterized protein n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q142Z3_BURXL
hypothetical protein; K06911 Tax=RBG_16_Gammaproteobacteria_62_13__curated
hypothetical protein
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_13
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10083..10328
DNA (246bp) protein (82aa)
Addiction module antitoxin RelB n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1SPP3_PSEME
Addiction module antitoxin RelB Tax=RBG_16_Gammaproteobacteria_62_13__curated
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_14
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10348..10638
DNA (291bp) protein (97aa)
hypothetical protein Tax=RBG_16_Gammaproteobacteria_62_13__curated
Plasmid stabilization system id=4481207 bin=GWC2_Syntrophobacterales_56_13 species=Pelodictyon phaeoclathratiforme genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_15
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10949..11386
DNA (438bp) protein (146aa)
Tax=RBG_16_Gammaproteobacteria_62_13__curated
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_16
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11458..12516
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6GLG8_9DELT
hypothetical protein Tax=RBG_16_Gammaproteobacteria_62_13__curated
hypothetical protein
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_17
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12752..12955
DNA (204bp) protein (68aa)
Cold-shock DNA-binding domain protein n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DUB8_THIND
cspC_[H]; cold-shock DNA-binding domain protein Tax=RBG_16_Gammaproteobacteria_62_13__curated
cspC_[H]; cold-shock DNA-binding domain protein
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_18
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13110..13580
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DEY2_9GAMM
hypothetical protein Tax=RBG_16_Gammaproteobacteria_62_13__curated
hypothetical protein
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_19
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13584..13766)
DNA (183bp) protein (61aa)
Thioredoxin protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIE1_9PROT
thioredoxin protein Tax=RBG_16_Gammaproteobacteria_62_13__curated
thioredoxin protein
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_20
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14122..14346
DNA (225bp) protein (75aa)
Tax=RBG_16_Gammaproteobacteria_62_13__curated
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_21
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14836..15018)
DNA (183bp) protein (61aa)
Tax=RBG_16_Gammaproteobacteria_62_13__curated
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_22
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15286..15414
DNA (129bp) protein (43aa)
fructose-bisphosphate aldolase (EC:4.1.2.13); K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13] Tax=RBG_16_Gammaproteobacteria_62_13__curated
fructose-bisphosphate aldolase (EC:4.1.2.13); K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13] id=12493589 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_23
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15487..16398
DNA (912bp) protein (304aa)
LysR family transcriptional regulator n=1 Tax=Methylococcus capsulatus RepID=UPI00030F97FD
LysR family transcriptional regulator Tax=RBG_16_Gammaproteobacteria_62_13__curated
LysR family transcriptional regulator
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_24
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16905..17297)
DNA (393bp) protein (131aa)
Tax=RBG_16_Gammaproteobacteria_62_13__curated
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_25
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17306..17704)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B5Q8_9PROT
hypothetical protein Tax=RBG_16_Gammaproteobacteria_62_13__curated
hypothetical protein
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_26
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17800..19209
DNA (1410bp) protein (470aa)
hemN; oxygen-independent coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] Tax=RBG_16_Gammaproteobacteria_62_13__curated
coproporphyrinogen III oxidase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036BA00D
hemN; oxygen-independent coproporphyrinogen III oxidase
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_27
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19321..20082
DNA (762bp) protein (254aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Marichromatium purpuratum 984 RepID=F9TZ27_MARPU
Crp/Fnr family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein Tax=RBG_16_Gammaproteobacteria_62_13__curated
transcriptional regulator
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_28
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20168..21172
DNA (1005bp) protein (335aa)
bioB; biotin synthase (EC:2.8.1.6) Tax=RBG_16_Gammaproteobacteria_62_13__curated
bioB; biotin synthase (EC:2.8.1.6)
Biotin synthase (Biotin synthetase) n=1 Tax=mine drainage metagenome RepID=E6QRD6_9ZZZZ
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_29
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21173..21718)
DNA (546bp) protein (182aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] Tax=RBG_16_Gammaproteobacteria_62_13__curated
signal peptidase I (EC:3.4.21.89)
hypothetical protein n=1 Tax=Succinimonas amylolytica RepID=UPI00037D1076
RBG_16_Gammaproteobacteria_62_13__RBG_16_scaffold_8576_30
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22127..22678)
DNA (552bp) protein (184aa)
hypothetical protein; K07095 Tax=RBG_16_Gammaproteobacteria_62_13__curated
hypothetical protein
hypothetical protein; K07095 id=12498288 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Displaying items 1-30 of 35 in total

View Taxonomy