ggKbase home page

RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709

Search features with annotation key words

Displaying items 1-30 of 35 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_1
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..426)
DNA (426bp) protein (142aa)
speE; spermidine synthase (EC:2.5.1.16); K00797 spermidine synthase [EC:2.5.1.16] Tax=RBG_16_Gamma2_64_10_curated
Spermidine synthase (Putrescine aminopropyltransferase) (PAPT) (SPDSY) n=1 Tax=mine drainage metagenome RepID=E6QCY5_9ZZZZ
spermidine synthase
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_2
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1195..2406
DNA (1212bp) protein (404aa)
arginine decarboxylase; K01585 arginine decarboxylase [EC:4.1.1.19] Tax=RBG_16_Gamma2_64_10_curated
arginine decarboxylase n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00035D2857
arginine decarboxylase
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_3
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2441..3043)
DNA (603bp) protein (201aa)
Sporulation-like protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BMX8_9GAMM
sporulation related Tax=RBG_16_Gamma2_64_10_curated
sporulation related
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_4
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3095..4852)
DNA (1758bp) protein (586aa)
arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] Tax=RBG_16_Gamma2_64_10_curated
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=2 Tax=sulfur-oxidizing symbionts RepID=G2DB76_9GAMM
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_5
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5137..6132
DNA (996bp) protein (332aa)
cyclic nucleotide-binding protein Tax=RBG_16_Gamma2_64_10_curated
Diguanylate cyclase id=4959318 bin=GWC2_Syntrophobacterales_56_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
cyclic nucleotide-binding protein
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_6
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6143..6289)
DNA (147bp) protein (49aa)
Tax=RBG_16_Gamma2_64_10_curated
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_7
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6286..6753)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BQU2_9GAMM
hypothetical protein Tax=RBG_16_Gamma2_64_10_curated
hypothetical protein
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_8
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6755..9163)
DNA (2409bp) protein (803aa)
Membrane carboxypeptidase/penicillin-binding protein n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5SY13_9GAMM
multimodular transpeptidase-transglycosylase Tax=RBG_16_Gamma2_64_10_curated
multimodular transpeptidase-transglycosylase
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_9
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9383..10459
DNA (1077bp) protein (359aa)
Type IV pilus biogenesis protein PilM n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2D924_9GAMM
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RBG_16_Gamma2_64_10_curated
type IV pilus assembly protein PilM
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_10
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10456..11076
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8TD01_9GAMM
Tfp pilus assembly protein PilN Tax=RBG_16_Gamma2_64_10_curated
Tfp pilus assembly protein PilN
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_11
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11073..11717
DNA (645bp) protein (215aa)
Pilus assembly protein, PilO n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GYG3_METFK
pilus assembly protein, PilO; K02664 type IV pilus assembly protein PilO Tax=RBG_16_Gamma2_64_10_curated
pilus assembly protein, PilO
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_12
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11720..12241
DNA (522bp) protein (174aa)
Pilus assembly protein PilP n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ADV1_9PROT
pilus assembly protein PilP Tax=RBG_16_Gamma2_64_10_curated
pilus assembly protein PilP
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_13
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12778..12963)
DNA (186bp) protein (62aa)
Tax=RBG_16_Gamma2_64_10_curated
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_14
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13015..13221)
DNA (207bp) protein (69aa)
Tax=RBG_16_Gamma2_64_10_curated
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_15
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13854..14837
DNA (984bp) protein (328aa)
Type IV pilus secretin PilQ n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6APC6_9PROT
type IV pilus secretin PilQ Tax=RBG_16_Gamma2_64_10_curated
type IV pilus secretin PilQ
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_16
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15341..15523
DNA (183bp) protein (61aa)
Shikimate kinase n=1 Tax=Pseudomonas stutzeri DSM 10701 RepID=I6ZX65_PSEST
shikimate kinase Tax=RBG_16_Gamma2_64_10_curated
shikimate kinase
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_17
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15510..16595
DNA (1086bp) protein (362aa)
DHQS; 3-dehydroquinate synthase (EC:4.2.3.4 4.2.3.10); K01735 3-dehydroquinate synthase [EC:4.2.3.4] Tax=RBG_16_Gamma2_64_10_curated
3-dehydroquinate synthase n=1 Tax=Chlamydomonas reinhardtii RepID=A8J463_CHLRE
3-dehydroquinate synthase
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_18
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16722..17861
DNA (1140bp) protein (380aa)
dgt; deoxyguanosinetriphosphate triphosphohydrolase-like protein (EC:3.1.5.1) Tax=RBG_16_Gamma2_64_10_curated
dgt; deoxyguanosinetriphosphate triphosphohydrolase-like protein (EC:3.1.5.1)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B8U6_9PROT
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_19
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17692..18387)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:443 RepID=R6MYW6_9BACE
Uncharacterized protein Tax=RBG_16_Gamma2_64_10_curated
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_20
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18613..19002)
DNA (390bp) protein (130aa)
hypothetical protein Tax=RBG_16_Gamma2_64_10_curated
hypothetical protein id=4115283 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_21
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19511..20176)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TLL1_9MICO
hypothetical protein Tax=RBG_16_Gamma2_64_10_curated
hypothetical protein
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_22
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20194..20361)
DNA (168bp) protein (56aa)
Tax=RBG_16_Gamma2_64_10_curated
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_23
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20425..20748)
DNA (324bp) protein (108aa)
Tax=RBG_16_Gamma2_64_10_curated
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_24
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21050..22582
DNA (1533bp) protein (511aa)
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13) Tax=RBG_16_Gamma2_64_10_curated
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13)
Glutamate synthase [NADPH] large chain (NADPH-GOGAT) id=4847528 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_25
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22575..24074
DNA (1500bp) protein (500aa)
gltD; glutamate synthase [NADPH] small chain (EC:1.4.1.13) Tax=RBG_16_Gamma2_64_10_curated
gltD; glutamate synthase [NADPH] small chain (EC:1.4.1.13)
Glutamate synthase [NADPH] small chain, (NADPH-GOGAT) id=4847530 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_26
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24178..25242
DNA (1065bp) protein (355aa)
uroporphyrinogen decarboxylase (EC:4.1.1.37); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37] Tax=RBG_16_Gamma2_64_10_curated
uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3B8_NITHN
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_27
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25330..25758
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B6J7_9PROT
hypothetical protein Tax=RBG_16_Gamma2_64_10_curated
hypothetical protein
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_28
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25815..26069
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037246AE
transcriptional regulator/antitoxin MazE Tax=RBG_16_Gamma2_64_10_curated
transcriptional regulator/antitoxin MazE
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_29
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26069..26425
DNA (357bp) protein (119aa)
transcriptional modulator of MazE/toxin MazF; K07171 mRNA interferase [EC:3.1.-.-] Tax=RBG_16_Gamma2_64_10_curated
hypothetical protein n=2 Tax=Zetaproteobacteria RepID=UPI00037FBFB7
transcriptional modulator of MazE/toxin MazF
RBG_16_Gammaproteobacteria_64_10_RBG_16_scaffold_28709_30
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26464..28437
DNA (1974bp) protein (658aa)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Cyanothece RepID=B7JVI6_CYAP8
short chain dehydrogenase Tax=RBG_16_Gamma2_64_10_curated
short chain dehydrogenase
Displaying items 1-30 of 35 in total

View Taxonomy