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RBG_16_Gammaproteobacteria_65_31_RBG_16_scaffold_14964

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_Gammaproteobacteria_65_31_RBG_16_scaffold_14964_1
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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3..515
DNA (513bp) protein (171aa)
biotin biosynthesis protein BioC; K02169 malonyl-CoA O-methyltransferase [EC:2.1.1.197] Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
Malonyl-[acyl-carrier protein] O-methyltransferase n=1 Tax=Thiocapsa marina 5811 RepID=F9UEK3_9GAMM
biotin biosynthesis protein BioC
RBG_16_Gammaproteobacteria_65_31_RBG_16_scaffold_14964_2
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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581..1273
DNA (693bp) protein (231aa)
dethiobiotin synthase (EC:6.3.3.3) Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
dethiobiotin synthase (EC:6.3.3.3)
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B7Q3_9PROT
RBG_16_Gammaproteobacteria_65_31_RBG_16_scaffold_14964_3
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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1837..2676
DNA (840bp) protein (280aa)
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
cytochrome B559 subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI00035FD0DD
cytochrome B559 subunit alpha
RBG_16_Gammaproteobacteria_65_31_RBG_16_scaffold_14964_4
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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2678..4243
DNA (1566bp) protein (522aa)
ctaD_[H]; Cytochrome c oxidase polypeptide I (EC:1.9.3.1)
cytochrome oxidase subunit I n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000361CCC0
probable cytochrome c oxidase subunit 1-like Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
RBG_16_Gammaproteobacteria_65_31_RBG_16_scaffold_14964_5
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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4266..5135
DNA (870bp) protein (290aa)
coxC; cytochrome-c oxidase (EC:1.9.3.1); K02276 cytochrome c oxidase subunit III [EC:1.9.3.1] Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
coxC; cytochrome-c oxidase (EC:1.9.3.1)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00035CF72D
RBG_16_Gammaproteobacteria_65_31_RBG_16_scaffold_14964_6
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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5142..6173
DNA (1032bp) protein (344aa)
Cytochrome oxidase assembly n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) PF1_THISH">RepID=B8GPF1_THISH
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
cytochrome oxidase assembly
RBG_16_Gammaproteobacteria_65_31_RBG_16_scaffold_14964_7
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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6170..7138
DNA (969bp) protein (323aa)
protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
Protoheme IX farnesyltransferase n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BA37_9GAMM
protoheme IX farnesyltransferase
RBG_16_Gammaproteobacteria_65_31_RBG_16_scaffold_14964_8
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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7191..7700
DNA (510bp) protein (170aa)
Peroxiredoxin, typical 2-Cys subfamily n=2 Tax=Geobacter metallireducens RepID=Q39S33_GEOMG
Alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
prx-1; peroxiredoxin, typical 2-Cys subfamily
RBG_16_Gammaproteobacteria_65_31_RBG_16_scaffold_14964_9
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7720..8442
DNA (723bp) protein (241aa)
Putative integral membrane protein DUF125 n=1 Tax=uncultured marine microorganism HF4000_APKG5H11 RepID=B3T8K1_9ZZZZ
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
hypothetical protein
RBG_16_Gammaproteobacteria_65_31_RBG_16_scaffold_14964_10
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8456..8908)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZUM1_DESOH
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
hypothetical protein
RBG_16_Gammaproteobacteria_65_31_RBG_16_scaffold_14964_11
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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9134..10756
DNA (1623bp) protein (541aa)
putative sensor histidine kinase with MCP region (EC:2.7.13.3) Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
putative sensor histidine kinase with MCP region (EC:2.7.13.3)
Sensory transduction histidine kinase id=3666223 bin=GWA2_OP3_52_12 species=uncultured archaeon GZfos26B2 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
RBG_16_Gammaproteobacteria_65_31_RBG_16_scaffold_14964_12
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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10753..11199
DNA (447bp) protein (149aa)
response regulator receiver Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
Response regulator rcp1 id=4876874 bin=GWA2_OP3_52_12 species=Methylomicrobium alcaliphilum genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
response regulator receiver
RBG_16_Gammaproteobacteria_65_31_RBG_16_scaffold_14964_13
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11731..12078)
DNA (348bp) protein (116aa)
Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Geobacter sp. (strain M18) RepID=E8WLZ3_GEOS8
PAS/PAC sensor-containing diguanylate cyclase
Diguanylate cyclase with PAS/PAC sensor {ECO:0000313|EMBL:ADW11713.1}; TaxID=443143 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geo
Displaying 13 items

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