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RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_trna_1
unknown

Not on your lists

92..165
DNA (74bp)
transferRNA
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_trna_2
unknown

Not on your lists

236..309
DNA (74bp)
transferRNA
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_trna_3
unknown

Not on your lists

417..489
DNA (73bp)
transferRNA
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_trna_4
unknown

Not on your lists

600..681
DNA (82bp)
transferRNA
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_1
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

778..2082
DNA (1305bp) protein (435aa)
tig; trigger factor (EC:5.2.1.8) Tax=RBG_16_Gamma2_65_34_curated
tig; trigger factor (EC:5.2.1.8)
Trigger factor n=1 Tax=Pseudomonas stutzeri ATCC 14405 = CCUG 16156 RepID=H7EUJ5_PSEST
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_2
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2114..2743
DNA (630bp) protein (210aa)
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=RBG_16_Gamma2_65_34_curated
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Marichromatium purpuratum 984 RepID=F9U3S3_MARPU
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_3
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2893..4194
DNA (1302bp) protein (434aa)
ATP-dependent protease n=1 Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI000377E3A2
clpX2; ATP-dependent protease ATP-binding subunit ClpX Tax=RBG_16_Gamma2_65_34_curated
clpX; ATP-dependent protease ATP-binding subunit ClpX
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_4
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4374..6824
DNA (2451bp) protein (817aa)
ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] Tax=RBG_16_Gamma2_65_34_curated
ATP-dependent protease La (EC:3.4.21.53)
peptidase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000366D123
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_5
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7126..7398
DNA (273bp) protein (91aa)
transcriptional regulator n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003640148
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta Tax=RBG_16_Gamma2_65_34_curated
histone family protein DNA-binding protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_trna_5
unknown

Not on your lists

7503..7575
DNA (73bp)
transferRNA
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_trna_6
unknown

Not on your lists

7675..7748
DNA (74bp)
transferRNA
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_6
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7945..9834
DNA (1890bp) protein (630aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] Tax=RBG_16_Gamma2_65_34_curated
Peptidyl-prolyl cis-trans isomerase D n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BYR4_9GAMM
PpiC-type peptidyl-prolyl cis-trans isomerase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_7
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9982..10782)
DNA (801bp) protein (267aa)
short-chain dehydrogenase/reductase SDR; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9] Tax=RBG_16_Gamma2_65_34_curated
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BXL9_NITHN
short-chain dehydrogenase/reductase SDR
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_8
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10932..13106
DNA (2175bp) protein (725aa)
Extracellular solute-binding protein family 5 n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BXM0_NITHN
family 5 extracellular solute-binding protein Tax=RBG_16_Gamma2_65_34_curated
family 5 extracellular solute-binding protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_9
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13103..14083
DNA (981bp) protein (327aa)
Oligopeptide transport system permease protein oppB n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NYD5_AROAE
oppB; oligopeptide transport system permease protein oppB; K02033 peptide/nickel transport system permease protein Tax=RBG_16_Gamma2_65_34_curated
oppB; oligopeptide transport system permease protein oppB
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_10
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14187..15578
DNA (1392bp) protein (464aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Marichromatium purpuratum 984 RepID=F9U3R5_MARPU
binding-protein-dependent transporters inner membrane component; K02034 peptide/nickel transport system permease protein Tax=RBG_16_Gamma2_65_34_curated
peptide ABC transporter permease
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_11
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15617..17647
DNA (2031bp) protein (677aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BME2_9GAMM
oligopeptide/dipeptide ABC transporter ATP-binding protein Tax=RBG_16_Gamma2_65_34_curated
oligopeptide/dipeptide ABC transporter ATP-binding protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_12
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17721..19184)
DNA (1464bp) protein (488aa)
lytic transglycosylase; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-] Tax=RBG_16_Gamma2_65_34_curated
Membrane-bound lytic murein transglycosylase D n=1 Tax=Methylophaga lonarensis MPL RepID=M7NYV9_9GAMM
lytic transglycosylase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_13
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19218..19991)
DNA (774bp) protein (258aa)
gloB; hydroxyacylglutathione hydrolase (EC:3.1.2.6); K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6] Tax=RBG_16_Gamma2_65_34_curated
gloB; hydroxyacylglutathione hydrolase (EC:3.1.2.6)
Hydroxyacylglutathione hydrolase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BUS9_9GAMM
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_14
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20028..20807
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037CFCAA
type 11 methyltransferase Tax=RBG_16_Gamma2_65_34_curated
type 11 methyltransferase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_6637_15
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20800..21237
DNA (438bp) protein (146aa)
RNaseH ribonuclease n=1 Tax=Arhodomonas aquaeolei RepID=UPI00036DCCD0
rnhA; RNase H Tax=RBG_16_Gamma2_65_34_curated
rnhA; RNase H
Displaying 21 items

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