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RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422

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Displaying 16 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_1
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

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comp(26..196)
DNA (171bp) protein (57aa)
Acyl-CoA dehydrogenase, short-chain specific Tax=RBG_16_Nitrospirae_43_8_curated
Acyl-CoA dehydrogenase, short-chain specific id=4127508 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_2
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

289..468
DNA (180bp) protein (60aa)
hypothetical protein; K09862 hypothetical protein Tax=RBG_16_Nitrospirae_43_8_curated
DNA gyrase inhibitor YacG id=4127509 bin=GWF2_Nitrospirae_44_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_3
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(660..971)
DNA (312bp) protein (104aa)
theronine dehydrogenase-like Zn-dependent dehydrogenase Tax=RBG_16_Nitrospirae_43_8_curated
Alcohol dehydrogenase id=4127511 bin=GWF2_Nitrospirae_44_13 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
theronine dehydrogenase-like Zn-dependent dehydrogenase
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_4
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

1161..1697
DNA (537bp) protein (179aa)
Tax=RBG_16_Nitrospirae_43_8_curated
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_5
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

1842..2585
DNA (744bp) protein (248aa)
putative protein-S-isoprenylcysteine methyltransferase Tax=RBG_16_Nitrospirae_43_8_curated
Putative uncharacterized protein id=4427623 bin=GWF2_Lentisphaerae_50_93 species=uncultured Latescibacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Latescibacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
phospholipid methyltransferase
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_6
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(2784..3056)
DNA (273bp) protein (91aa)
aldolase; K08321 putative autoinducer-2 (AI-2) aldolase [EC:4.1.2.-] Tax=RBG_16_Nitrospirae_43_8_curated
Fructose-bisphosphate aldolase id=4127544 bin=GWF2_Nitrospirae_44_13 species=Candidatus Nitrosoarchaeum koreensis genus=Candidatus Nitrosoarchaeum taxon_order=Nitrosopumilales taxon_class=unknown phylum=Thaumarchaeota tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
aldolase
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_7
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(3736..4200)
DNA (465bp) protein (155aa)
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR Tax=RBG_16_Nitrospirae_43_8_curated
Transcriptional repressor NrdR id=4127546 bin=GWF2_Nitrospirae_44_13 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
transcriptional regulator NrdR
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_8
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(4299..5537)
DNA (1239bp) protein (413aa)
glyA2; serine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] Tax=RBG_16_Nitrospirae_43_8_curated
glyA2; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase id=4127550 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_9
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(5527..5985)
DNA (459bp) protein (153aa)
rpiB; ribose 5-phosphate isomerase B (EC:5.3.1.6); K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] Tax=RBG_16_Nitrospirae_43_8_curated
rpiB; ribose 5-phosphate isomerase B (EC:5.3.1.6)
Ribose 5-phosphate isomerase B id=4127552 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_10
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

6124..6942
DNA (819bp) protein (273aa)
extracellular tungstate binding protein; K05772 tungstate transport system substrate-binding protein Tax=RBG_16_Nitrospirae_43_8_curated
Extracellular tungstate binding protein id=4127554 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
extracellular tungstate binding protein
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_11
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

7276..7704
DNA (429bp) protein (143aa)
permease component of tungstate ABC transporter; K05773 tungstate transport system permease protein Tax=RBG_16_Nitrospirae_43_8_curated
Permease component of tungstate ABC transporter id=4127556 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
tungstate ABC transporter permease
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_12
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

7701..8414
DNA (714bp) protein (238aa)
phosphate import ATP-binding protein PstB 1 (EC:3.6.3.27); K06857 tungstate transport system ATP-binding protein Tax=RBG_16_Nitrospirae_43_8_curated
phosphate import ATP-binding protein PstB 1 (EC:3.6.3.27)
Phosphate import ATP-binding protein PstB 1 id=4127560 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_trna_1
unknown

Not on your lists

8512..8595
DNA (84bp)
transferRNA
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_13
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

8801..9199
DNA (399bp) protein (133aa)
Tax=RBG_16_Nitrospirae_43_8_curated
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_14
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

9551..11818
DNA (2268bp) protein (756aa)
Sigma 54 interacting domain protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WPB7_GEOS8
sigma 54 interacting domain-containing protein Tax=RBG_16_Nitrospirae_43_8_curated
sigma 54 interacting domain-containing protein
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_22422_15
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

12082..12420
DNA (339bp) protein (113aa)
Transposase n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IEB6_9BURK
transposase
Transposase Tax=RBG_16_Nitrospirae_43_8_curated
Displaying 16 items

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