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RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565

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Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_1
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(2..238)
DNA (237bp) protein (79aa)
peptidase RseP; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RBG_16_Nitrospirae_43_8_curated
Peptidase M50 id=3929495 bin=GWF2_Nitrospirae_44_13 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
rseP; membrane-associated zinc metalloprotease RseP
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_2
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(250..1404)
DNA (1155bp) protein (385aa)
dxr; 1-deoxy-D-xylulose-5-phosphate synthase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RBG_16_Nitrospirae_43_8_curated
dxr; 1-deoxy-D-xylulose-5-phosphate synthase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase id=3929497 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_3
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(1401..2198)
DNA (798bp) protein (266aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41); K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41] Tax=RBG_16_Nitrospirae_43_8_curated
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase id=3929500 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_4
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(2200..2970)
DNA (771bp) protein (257aa)
uppS; di-trans,poly-cis-decaprenylcistransferase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RBG_16_Nitrospirae_43_8_curated
uppS; di-trans,poly-cis-decaprenylcistransferase (EC:2.5.1.31)
Isoprenyl transferase id=3929506 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_5
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(2916..6758)
DNA (3843bp) protein (1281aa)
alpha-amylase/alpha-mannosidase Tax=RBG_16_Nitrospirae_43_8_curated
Glycoside hydrolase family 57 id=3929512 bin=GWF2_Nitrospirae_44_13 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
alpha-amylase/alpha-mannosidase
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_6
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

7281..8051
DNA (771bp) protein (257aa)
WabG; K02844 UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] Tax=RBG_16_Nitrospirae_43_8_curated
WabG id=3929515 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
glucuronic acid transferase WabG
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_7
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(8198..8371)
DNA (174bp) protein (58aa)
UPF0434 protein Hipma_0205 n=1 Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LXJ6_HIPMA
hypothetical protein; K09791 hypothetical protein Tax=RBG_16_Nitrospirae_43_8_curated
hypothetical protein
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_8
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(8386..9000)
DNA (615bp) protein (205aa)
hypothetical protein Tax=RBG_16_Nitrospirae_43_8_curated
Putative uncharacterized protein id=3929581 bin=GWF2_Nitrospirae_44_13 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_9
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(9107..9967)
DNA (861bp) protein (287aa)
hypothetical protein; K06958 UPF0042 nucleotide-binding protein Tax=RBG_16_Nitrospirae_43_8_curated
UPF0042 nucleotide-binding protein THEYE_A0235 id=3929585 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_10
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(10057..10578)
DNA (522bp) protein (174aa)
SSU ribosomal protein S30P; K05808 putative sigma-54 modulation protein Tax=RBG_16_Nitrospirae_43_8_curated
SSU ribosomal protein S30P id=3929590 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
30S ribosomal protein S30P
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_11
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(10592..12043)
DNA (1452bp) protein (484aa)
rpoN; RNA polymerase sigma-54 factor; K03092 RNA polymerase sigma-54 factor Tax=RBG_16_Nitrospirae_43_8_curated
RNA polymerase sigma-54 factor id=3929592 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
rpoN; RNA polymerase sigma-54 factor
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_12
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(12043..12765)
DNA (723bp) protein (241aa)
ABC transporter ATPase; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] Tax=RBG_16_Nitrospirae_43_8_curated
Unclassified ABC-type transport system, ATPase component id=3929595 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
ABC transporter ATPase
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_13
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(12766..13236)
DNA (471bp) protein (157aa)
hypothetical protein; K09774 lipopolysaccharide export system protein LptA Tax=RBG_16_Nitrospirae_43_8_curated
Putative uncharacterized protein id=3929598 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_14
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(13211..13720)
DNA (510bp) protein (170aa)
hypothetical protein Tax=RBG_16_Nitrospirae_43_8_curated
Putative uncharacterized protein id=3929602 bin=GWF2_Nitrospirae_44_13 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_trna_1
unknown

Not on your lists

comp(13811..13882)
DNA (72bp)
transferRNA
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_15
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(13966..14805)
DNA (840bp) protein (280aa)
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25] Tax=RBG_16_Nitrospirae_43_8_curated
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase id=3929620 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_16
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(14799..16106)
DNA (1308bp) protein (436aa)
PDZ domain protein Tax=RBG_16_Nitrospirae_43_8_curated
PDZ domain protein id=3929623 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
PDZ domain-containing protein
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_17
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(16096..16635)
DNA (540bp) protein (180aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5) Tax=RBG_16_Nitrospirae_43_8_curated
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=3929626 bin=GWF2_Nitrospirae_44_13 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_18
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(16749..17837)
DNA (1089bp) protein (363aa)
tetratricopeptide repeat domain protein Tax=RBG_16_Nitrospirae_43_8_curated
Tetratricopeptide repeat domain protein id=3929628 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
tetratricopeptide repeat domain-containing protein
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_19
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(17834..18493)
DNA (660bp) protein (220aa)
rpe; ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RBG_16_Nitrospirae_43_8_curated
Ribulose-phosphate 3-epimerase id=3929630 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
ribulose-phosphate 3-epimerase
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_20
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(18571..19269)
DNA (699bp) protein (233aa)
protein PASTA domain-containing protein Tax=RBG_16_Nitrospirae_43_8_curated
PASTA domain containing protein id=3929632 bin=GWF2_Nitrospirae_44_13 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
protein PASTA domain-containing protein
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_21
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists


comp(19275..19667)
DNA (393bp) protein (131aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] Tax=RBG_16_Nitrospirae_43_8_curated
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A id=3929634 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_22
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(21976..25299)
DNA (3324bp) protein (1108aa)
carB; carbamoyl-phosphate synthase, large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] Tax=RBG_16_Nitrospirae_43_8_curated
carB; carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain id=3929636 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_23
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(25299..26489)
DNA (1191bp) protein (397aa)
carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit (EC:6.3.5.5) Tax=RBG_16_Nitrospirae_43_8_curated
carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain id=3929638 bin=GWF2_Nitrospirae_44_13 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_24
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(26482..27786)
DNA (1305bp) protein (435aa)
dihydroorotase (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3] Tax=RBG_16_Nitrospirae_43_8_curated
dihydroorotase (EC:3.5.2.3)
Dihydroorotase id=3929640 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_25
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(27791..28714)
DNA (924bp) protein (308aa)
pyrB; aspartate carbamoyltransferase catalytic subunit; K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] Tax=RBG_16_Nitrospirae_43_8_curated
Aspartate carbamoyltransferase id=3929642 bin=GWF2_Nitrospirae_44_13 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
pyrB; aspartate carbamoyltransferase catalytic subunit
RBG_16_Nitrospirae_43_8_RBG_16_scaffold_4565_26
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(28711..29235)
DNA (525bp) protein (175aa)
pyrR; bifunctional protein PyrR (EC:2.4.2.9); K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] Tax=RBG_16_Nitrospirae_43_8_curated
pyrR; bifunctional protein PyrR (EC:2.4.2.9)
Bifunctional protein PyrR id=3929644 bin=GWF2_Nitrospirae_44_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Displaying 27 items

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