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RBG_16_NSX_64_22_RBG_16_scaffold_3324

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Displaying items 1-30 of 44 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_NSX_64_22_RBG_16_scaffold_3324_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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2..283
DNA (282bp) protein (94aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_3324_2
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(453..974)
DNA (522bp) protein (174aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_3324_3
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(1096..1404)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YUL6_9THEM
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_3324_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(1508..2512)
DNA (1005bp) protein (335aa)
galactose-1-phosphate uridylyltransferase (EC:2.7.7.12) Tax=RBG_16_Nitrospirae_64_22_curated
galactose-1-phosphate uridylyltransferase (EC:2.7.7.12)
Galactose-1-phosphate uridylyltransferase id=4044036 bin=GWF2_Nitrospirae_44_13 species=Oscillatoria sp. PCC 6506 genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_16_NSX_64_22_RBG_16_scaffold_3324_5
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

2630..3727
DNA (1098bp) protein (366aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_3324_6
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

4234..4617
DNA (384bp) protein (128aa)
PilT domain-containing protein Tax=RBG_16_Nitrospirae_64_22_curated
PilT protein domain protein id=4452898 bin=GWC2_Geobacteraceae_55_20 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
PilT domain-containing protein
RBG_16_NSX_64_22_RBG_16_scaffold_3324_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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4797..5414
DNA (618bp) protein (206aa)
putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; K13818 molybdopterin-guanine dinucleotide biosynthesis protein Tax=RBG_16_Nitrospirae_64_22_curated
Probable molybdenum cofactor guanylyltransferase id=4002137 bin=GWC2_Nitrospirae_57_13 species=Desulfosporosinus acidiphilus genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB
RBG_16_NSX_64_22_RBG_16_scaffold_3324_8
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

5420..5614
DNA (195bp) protein (65aa)
twin-arginine translocation protein, TatA/E family subunit; K03116 sec-independent protein translocase protein TatA Tax=RBG_16_Nitrospirae_64_22_curated
Sec-independent protein translocase protein TatA id=4329505 bin=GWC2_Nitrospirae-rel_56_14 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
twin-arginine translocation protein, TatA/E family subunit
RBG_16_NSX_64_22_RBG_16_scaffold_3324_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

5698..8097
DNA (2400bp) protein (800aa)
GAF sensor signal transduction histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] Tax=RBG_16_Nitrospirae_64_22_curated
Sensor histidine kinase cyclic nucleotide phosphodiesterase, GAF, GAF and HD-GYP-related domain-containing n=2 Tax=Geobacter metallireducens RepID=Q39U54_GEOMG
sensor histidine kinase cyclic nucleotide phosphodiesterase
RBG_16_NSX_64_22_RBG_16_scaffold_3324_10
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

8213..8515
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JRQ5_9RHOB
lipid A biosynthesis domain-containing protein Tax=RBG_16_Nitrospirae_64_22_curated
Lipid A biosynthesis protein
RBG_16_NSX_64_22_RBG_16_scaffold_3324_11
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

8512..9783
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8C0_9BACT
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_3324_12
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

9796..11511
DNA (1716bp) protein (572aa)
putative glycosyl transferase, family 39 (EC:2.-.-.-) Tax=RBG_16_Nitrospirae_64_22_curated
putative glycosyl transferase, family 39 (EC:2.-.-.-)
Putative Glycosyl transferase, family 39 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8B9_9BACT
RBG_16_NSX_64_22_RBG_16_scaffold_3324_13
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

11508..12218
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI0003721E21
family 2 glycosyl transferase Tax=RBG_16_Nitrospirae_64_22_curated
family 2 glycosyl transferase
RBG_16_NSX_64_22_RBG_16_scaffold_3324_14
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(12353..13645)
DNA (1293bp) protein (431aa)
glpC; sn-glycerol-3-phosphate dehydrogenase subunit C; K00113 glycerol-3-phosphate dehydrogenase subunit C [EC:1.1.5.3] Tax=RBG_16_Nitrospirae_64_22_curated
Putative uncharacterized protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NRE9_ROSCS
glpC; sn-glycerol-3-phosphate dehydrogenase subunit C
RBG_16_NSX_64_22_RBG_16_scaffold_3324_15
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

13789..14610
DNA (822bp) protein (274aa)
cyclic nucleotide-binding domain-containing protein Tax=RBG_16_Nitrospirae_64_22_curated
PKA regulatory subunit-like protein id=4907917 bin=GWC2_Nitrospirae-rel_56_14 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
cyclic nucleotide-binding domain-containing protein
RBG_16_NSX_64_22_RBG_16_scaffold_3324_16
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(14611..15486)
DNA (876bp) protein (292aa)
Micrococcal nuclease (EC:3.1.31.1) Tax=RBG_16_Nitrospirae_64_22_curated
Micrococcal nuclease (EC:3.1.31.1) id=14430566 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
Micrococcal nuclease (EC:3.1.31.1)
RBG_16_NSX_64_22_RBG_16_scaffold_3324_17
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists


comp(15503..17929)
DNA (2427bp) protein (809aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RBG_16_Nitrospirae_64_22_curated
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=SYFB_SYNAS
RBG_16_NSX_64_22_RBG_16_scaffold_3324_18
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(18038..18385)
DNA (348bp) protein (116aa)
DNA polymerase beta domain protein region n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BV94_NITHN
DNA polymerase beta domain-containing protein Tax=RBG_16_Nitrospirae_64_22_curated
DNA polymerase beta domain-containing protein
RBG_16_NSX_64_22_RBG_16_scaffold_3324_19
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(18382..18807)
DNA (426bp) protein (142aa)
nucleotidyltransferase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B4CF39
nucleotidyltransferase substrate binding protein Tax=RBG_16_Nitrospirae_64_22_curated
nucleotidyltransferase substrate binding protein
RBG_16_NSX_64_22_RBG_16_scaffold_3324_20
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists


comp(18877..19905)
DNA (1029bp) protein (343aa)
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RBG_16_Nitrospirae_64_22_curated
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit id=4841726 bin=GWC2_Deltaproteobacteria_55_46 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
RBG_16_NSX_64_22_RBG_16_scaffold_3324_21
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists


comp(20032..20388)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=RL20_PELCD
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 Tax=RBG_16_Nitrospirae_64_22_curated
rplT; 50S ribosomal protein L20
RBG_16_NSX_64_22_RBG_16_scaffold_3324_22
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists


comp(20489..20689)
DNA (201bp) protein (67aa)
50S ribosomal protein L35 n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H4C6_9CLOT
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RBG_16_Nitrospirae_64_22_curated
rpmI; 50S ribosomal protein L35
RBG_16_NSX_64_22_RBG_16_scaffold_3324_23
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(20775..21272)
DNA (498bp) protein (166aa)
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RBG_16_Nitrospirae_64_22_curated
Translation initiation factor IF-3 id=4285474 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
infC; translation initiation factor IF-3
RBG_16_NSX_64_22_RBG_16_scaffold_3324_24
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(21380..23317)
DNA (1938bp) protein (646aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RBG_16_Nitrospirae_64_22_curated
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC1_9BACT
RBG_16_NSX_64_22_RBG_16_scaffold_3324_trna_1
unknown

Not on your lists

comp(23467..23538)
DNA (72bp)
transferRNA
RBG_16_NSX_64_22_RBG_16_scaffold_3324_25
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

23701..24612
DNA (912bp) protein (304aa)
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RBG_16_Nitrospirae_64_22_curated
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
Branched chain amino acid aminotransferase apoenzyme id=1740430 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
RBG_16_NSX_64_22_RBG_16_scaffold_3324_26
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

24609..25286
DNA (678bp) protein (226aa)
deoxyribose-phosphate aldolase (EC:4.1.2.4); K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4] Tax=RBG_16_Nitrospirae_64_22_curated
deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase id=4921080 bin=GWC2_Nitrospirae-rel_56_14 species=Streptococcus macacae genus=Streptococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RBG_16_NSX_64_22_RBG_16_scaffold_3324_27
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

25422..26834
DNA (1413bp) protein (471aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
Response regulator receiver protein id=1893306 bin=GWD2_Nitrospirae-related_57_8 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_3324_28
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

26977..27339
DNA (363bp) protein (121aa)
response regulator receiver protein; K02658 twitching motility two-component system response regulator PilH Tax=RBG_16_Nitrospirae_64_22_curated
Response regulator receiver protein id=4683452 bin=GWC2_Nitrospirae_57_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
response regulator receiver protein
RBG_16_NSX_64_22_RBG_16_scaffold_3324_29
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

27366..28235
DNA (870bp) protein (290aa)
phosphate binding protein; K02040 phosphate transport system substrate-binding protein Tax=RBG_16_Nitrospirae_64_22_curated
ABC-type phosphate transport system periplasmic component-like protein id=2217451 bin=GWB2_Nitrospirae_rel_47_37 species=Thioalkalivibrio thiocyanoxidans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
phosphate binding protein
Displaying items 1-30 of 44 in total

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